PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01768.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 306aa    MW: 31434.8 Da    PI: 4.9128
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01768.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-3085143259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+ver++ +p++v++tY+ eHnh+
  Pahal.E01768.1  85 TDSWAWRKYGQKPIKGSPFPRAYYRCSSNkGCPARKQVERNRAEPDMVIVTYSFEHNHS 143
                     69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.90779145IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-3081143IPR003657WRKY domain
SuperFamilySSF1182905.49E-2582143IPR003657WRKY domain
SMARTSM007743.8E-3584144IPR003657WRKY domain
PfamPF031067.1E-2686142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDGEWSDGAA VSSPTVSGGE GKVGPVRGVP ADDCPGSPAS PAAPSTAAPA ASGRRRSANK  60
RVVNVPLADV SGPRPKGVGE GNTPTDSWAW RKYGQKPIKG SPFPRAYYRC SSNKGCPARK  120
QVERNRAEPD MVIVTYSFEH NHSNAVPKAQ QNRPAPKPKP QPAPPEPADS LSSGSHEVAA  180
TACAGALATT EGGAAAAAVE VHDDFRWLYD GVSVTSSTSP SDVDAADEML YGTMFFGAAQ  240
PAPLPDEFGD VAGLFDGGVG EEDAMFAGLG ELPECAMVFR RHAGDGLPMS GGVKVEQPAE  300
STAMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1657142376Disease resistance protein RRS1
5w3x_D2e-1657142376Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814691.10.0probable WRKY transcription factor 65
TrEMBLA0A2S3HS860.0A0A2S3HS86_9POAL; Uncharacterized protein
STRINGPavir.Ea02968.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109473341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-37WRKY DNA-binding protein 65