PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01752.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 208aa MW: 21489.1 Da PI: 7.981 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 38.5 | 2.2e-12 | 173 | 197 | 1 | 28 |
---SS-EEEEEEE--TT-SS-EEEEEE- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCt 28 ldDgy+WrKYGqK vk+s +prs C+ Pahal.E01752.2 173 LDDGYRWRKYGQKAVKNSAHPRS---CA 197 59********************9...54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-13 | 159 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-10 | 166 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.989 | 168 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-5 | 173 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-8 | 174 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MENLQGGDDE PHALPGFPYF SMPSPPAVLD APPSLSPDDN QHGALAALQQ ASAAACNSLQ 60 LPPLGPDQLA TVAPTMILPP MVDWPSLLQQ AGLMVGSPPV PGLHLHQQAA AAAQQLDQSG 120 ENDCGEAAAG SSGGTGNKEK ARISGAGRSS SSGKKKVSRP RFAFQTRSAN DILDDGYRWR 180 KYGQKAVKNS AHPRSCASII SCSGIKK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728244 | 8e-46 | KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817430.1 | 1e-150 | WRKY transcription factor 68-like isoform X3 | ||||
TrEMBL | A0A2S3HRZ2 | 1e-148 | A0A2S3HRZ2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DH46 | 1e-148 | A0A2T7DH46_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03043.1.p | 4e-96 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.1 | 6e-16 | WRKY DNA-binding protein 43 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01752.2 |