PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Pahal.E01653.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-PHD

Protein Properties

Length: 1463aa MW: 159843 Da PI: 7.4426

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01653.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.2	7.5e-10	697	741	8	52
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + ++ L+ +Fe+++yps++++e LA++lgLt +qV WF R Pahal.E01653.2 697 GPIVTQKLKVHFEEDPYPSHATKENLAQELGLTFNQVCRWFSSTR 741 5667899**********************************8776 PP
2	Homeobox	32.8	1.2e-10	915	951	13	49
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49 + L+++Fek++yps++++e LA++lgLt +qV+ WF Pahal.E01653.2 915 QKLKAHFEKDPYPSRSTKESLAQELGLTFNQVSKWFS 951 78**********************************7 PP
3	PHD	41.3	3.4e-14	436	490	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C +Cg+ + +++++lCdg C++ fH++Cl+++l +e++p g wlC+ C + Pahal.E01653.2 436 FCGICGSkdVTLQNDIILCDGaCDRGFHQNCLKPPLLTEDIPPGdeGWLCPACVC 490 7****64445****66****************9999*****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.88E-15	427	492	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	4.0E-14	432	491	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.101	434	491	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	2.16E-28	436	488	No hit	No description
SMART	SM00249	6.5E-12	436	489	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	2.2E-11	436	490	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	437	488	IPR019786	Zinc finger, PHD-type, conserved site
SMART	SM00389	2.5E-10	690	751	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.52E-10	693	746	IPR009057	Homeodomain-like
CDD	cd00086	2.20E-10	694	745	No hit	No description
Pfam	PF00046	2.7E-7	698	741	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.9E-11	701	753	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.147	704	747	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-11	897	950	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.37E-10	897	955	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.135	900	960	IPR001356	Homeobox domain
SMART	SM00389	6.7E-11	902	964	IPR001356	Homeobox domain
CDD	cd00086	3.19E-11	909	958	No hit	No description
Pfam	PF00046	3.6E-8	915	951	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	935	958	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1463 aa Download sequence Send to blast
MGRKGSEVSP SKRYPLRSAH GSGRVLRSAS AKDNKACNEP PNASAAAQSA VSKRRNGSPS 60 VRPNNSVRVL RSASKNKDDA CSEPLNDWTT AKPAANERKS ASPSHMGSTT NTVRVLRSAL 120 KSKDGVCSEP ITNRTAGEPA ANKRKNVSPS KLRSPSNSVR VLLSASKYKE ETYTEPLNDN 180 TAVDPGTNRR KIASPSKVGS PISPNNTVRV LRSALKSKNE ACSEPLNDST VGQPTVKRRK 240 TGSPLKVASP VSSARVLRST SERKNDACNE PLNDSTAAQP AAGKGKGETL LKTDSPNIDV 300 RVLRSASGNK NEACSEPVND STSAQKAVRK RKGCRPLNDR SPKKEYVKIC QRVRYILNRM 360 NYQQSFIQAY ASEGWKGQSL EKIRPEKELE RAKEEILQCK LRIREAFRNM DAILSEGKLE 420 ESLFDSAGQI SSEDIFCGIC GSKDVTLQND IILCDGACDR GFHQNCLKPP LLTEDIPPGD 480 EGWLCPACVC KADSIDALNE LQGNKLSIHD SWEKVFPEAA SPANGSKQVG SSDLPPDRIE 540 DNDYNPPLAE GHMNQDRFSA EDDGKVDDLG LPSEDSEDDD FDPADMELDQ GMVLPISSRR 600 QVERLDYKKL YDEAYGKESS GSSDDEEWSG KELLEGSETD SHGEQLHPAK RCSRRAPAGQ 660 QNNEHTPQRE RLHGSESEQQ TKVFRSNGSS STGRKFGPIV TQKLKVHFEE DPYPSHATKE 720 NLAQELGLTF NQVCRWFSST RHYSRVASAK KEKHPDNHTS ENNDSTNVHS MQTREPSAGV 780 MEKLTLDRND IVPEKPMVQN NLNQCNKKDM PLSGTEIEME SYGQESSDSS DEEWSAFSTP 840 RKARLQDNET ASPAESLHPA KRCSRRAPDR GQNNEHTPQS EQRHGSASEQ QTDVLCSNSS 900 SSKASKYHFG PIVNQKLKAH FEKDPYPSRS TKESLAQELG LTFNQVSKWF SAIRHYSRGA 960 AAKNKKHPGK NTTENDNSTT FDGVQIREGL VEKTSTDIND MISEKLMVQI NLNEGIEEDI 1020 PPSQYTRCEE RATMTPTTIS RDVGPPGYGP GENFLQVGSR NTCEQNVITT PTPILRVDPP 1080 GYVRGENQGN DAPWNTSCEQ SMFMSSATIS REVGPPGYGP EQNQGVSMSS TTISREAGPP 1140 GYGSGENQGS GTSWNTSCEQ GMFTSPAIIS REVGPPGYGP GENQGNGTSP NTSCELRMFT 1200 SPMAISREVS LPGYEPGENQ NNGTSWNMSY KKGVFMSPTA ISREVGPPGF GPGENQGSST 1260 SWNMRCEQRM YTIPTAISRE ARPPGYGGEN QGNGASWSMS YEHGVFSSPT AISREIGPPG 1320 YGPGENQGNT TSWVTSRKQR MFTSPTTVSS EGGLPGYSIV ENQGTGGSRN IDLEQRVFVT 1380 PATISREVFP PGYNLEQRVA ATPATISREV FPPGYGPGEN QGSGASGSVR IPQGRSAEKV 1440 GFSDEARKKA IQRELRRRQK FR*

Sequence ? help Back to Top

Protein Sequence Length: 1463 aa Download sequence Send to blast

MGRKGSEVSP SKRYPLRSAH GSGRVLRSAS AKDNKACNEP PNASAAAQSA VSKRRNGSPS  60
VRPNNSVRVL RSASKNKDDA CSEPLNDWTT AKPAANERKS ASPSHMGSTT NTVRVLRSAL  120
KSKDGVCSEP ITNRTAGEPA ANKRKNVSPS KLRSPSNSVR VLLSASKYKE ETYTEPLNDN  180
TAVDPGTNRR KIASPSKVGS PISPNNTVRV LRSALKSKNE ACSEPLNDST VGQPTVKRRK  240
TGSPLKVASP VSSARVLRST SERKNDACNE PLNDSTAAQP AAGKGKGETL LKTDSPNIDV  300
RVLRSASGNK NEACSEPVND STSAQKAVRK RKGCRPLNDR SPKKEYVKIC QRVRYILNRM  360
NYQQSFIQAY ASEGWKGQSL EKIRPEKELE RAKEEILQCK LRIREAFRNM DAILSEGKLE  420
ESLFDSAGQI SSEDIFCGIC GSKDVTLQND IILCDGACDR GFHQNCLKPP LLTEDIPPGD  480
EGWLCPACVC KADSIDALNE LQGNKLSIHD SWEKVFPEAA SPANGSKQVG SSDLPPDRIE  540
DNDYNPPLAE GHMNQDRFSA EDDGKVDDLG LPSEDSEDDD FDPADMELDQ GMVLPISSRR  600
QVERLDYKKL YDEAYGKESS GSSDDEEWSG KELLEGSETD SHGEQLHPAK RCSRRAPAGQ  660
QNNEHTPQRE RLHGSESEQQ TKVFRSNGSS STGRKFGPIV TQKLKVHFEE DPYPSHATKE  720
NLAQELGLTF NQVCRWFSST RHYSRVASAK KEKHPDNHTS ENNDSTNVHS MQTREPSAGV  780
MEKLTLDRND IVPEKPMVQN NLNQCNKKDM PLSGTEIEME SYGQESSDSS DEEWSAFSTP  840
RKARLQDNET ASPAESLHPA KRCSRRAPDR GQNNEHTPQS EQRHGSASEQ QTDVLCSNSS  900
SSKASKYHFG PIVNQKLKAH FEKDPYPSRS TKESLAQELG LTFNQVSKWF SAIRHYSRGA  960
AAKNKKHPGK NTTENDNSTT FDGVQIREGL VEKTSTDIND MISEKLMVQI NLNEGIEEDI  1020
PPSQYTRCEE RATMTPTTIS RDVGPPGYGP GENFLQVGSR NTCEQNVITT PTPILRVDPP  1080
GYVRGENQGN DAPWNTSCEQ SMFMSSATIS REVGPPGYGP EQNQGVSMSS TTISREAGPP  1140
GYGSGENQGS GTSWNTSCEQ GMFTSPAIIS REVGPPGYGP GENQGNGTSP NTSCELRMFT  1200
SPMAISREVS LPGYEPGENQ NNGTSWNMSY KKGVFMSPTA ISREVGPPGF GPGENQGSST  1260
SWNMRCEQRM YTIPTAISRE ARPPGYGGEN QGNGASWSMS YEHGVFSSPT AISREIGPPG  1320
YGPGENQGNT TSWVTSRKQR MFTSPTTVSS EGGLPGYSIV ENQGTGGSRN IDLEQRVFVT  1380
PATISREVFP PGYNLEQRVA ATPATISREV FPPGYGPGEN QGSGASGSVR IPQGRSAEKV  1440
GFSDEARKKA IQRELRRRQK FR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	331	KAVRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814927.1	0.0	uncharacterized protein LOC112892070 isoform X3
Swissprot	Q8H991	1e-139	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A2S3HRR3	0.0	A0A2S3HRR3_9POAL; Uncharacterized protein
STRING	Sb03g034510.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-81	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Pahal.E01653.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]