 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.E01632.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WRKY |
| Protein Properties |
Length: 300aa MW: 32732.1 Da PI: 4.6594 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E01632.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 95.9 | 2.8e-30 | 89 | 147 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
Pahal.E01632.1 89 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFEHNHP 147
69*************************998****************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MSSAEDGYCS SDSPRAESPE ESQAAADAES PRAGAKRERD LCDIPASPSS PLPAAKRSRR 60
SVEKRVVSVP LAECGDRPRG ASGEGPPPSD SWTWRKYGQK PIKGSPYPRG YYRCSSSKGC 120
PARKQVERSR ADPTVLLVTY TFEHNHPSPQ PKSNSCHQQG KASPRPAAPK PEPAVEQAEL 180
GPEHELKTEP EAPEQELEPE QEQEQELKVL ASLAEPETVT TATVAPVAEE DESFDFGWFD 240
QYPTWHRSAL YAPLLPPEEW ERELQGEDAL FAGLGELPEC AVVFGRRREL SLAATAPCS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KU058617 | 0.0 | KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence. |
