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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01561.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 534aa MW: 57234.4 Da PI: 7.6275 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.8e-21 | 94 | 149 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++++eq++++e++F+++++p++++r++L+++lgL++rqVk+WFqNrR++ k Pahal.E01561.2 94 RKSYHRHNAEQIKAMEAVFKESPHPDEKQRQQLSQELGLSTRQVKFWFQNRRTQIK 149 788999**********************************************9877 PP | |||||||
2 | START | 108.5 | 1.1e-34 | 347 | 462 | 93 | 206 |
EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +m+ae q l+pl p R++ f+R++++l+a++w++vdvS++ + + ss ++ + pSg++ie+ ng++kvtwveh+ ++ + +++++r+ Pahal.E01561.2 347 VMFAEVQTLTPLIPtREVHFLRHCKKLTADKWAVVDVSLEDVELDAQtSSTACKCLKKPSGCVIEEQTNGRCKVTWVEHATCRNAAVPSVYRPAA 441 799************************************9887776669999******************************************* PP HHHHHHHHHHHHHHTXXXXXX CS START 186 ksglaegaktwvatlqrqcek 206 sgla+ga++wva+l+ qce+ Pahal.E01561.2 442 ASGLAFGARRWVAALRLQCER 462 *******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-23 | 80 | 145 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-20 | 86 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.945 | 91 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-18 | 93 | 155 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.91E-18 | 94 | 152 | No hit | No description |
Pfam | PF00046 | 2.1E-18 | 94 | 149 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.4E-5 | 122 | 131 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 126 | 149 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-5 | 131 | 147 | IPR000047 | Helix-turn-helix motif |
PROSITE profile | PS50848 | 26.76 | 259 | 465 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.85E-21 | 262 | 462 | No hit | No description |
CDD | cd08875 | 8.85E-70 | 265 | 461 | No hit | No description |
SMART | SM00234 | 2.0E-22 | 268 | 462 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-29 | 269 | 462 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.4E-4 | 282 | 304 | IPR023393 | START-like domain |
Gene3D | G3DSA:3.30.530.20 | 9.4E-4 | 345 | 429 | IPR023393 | START-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MGSSRPPPRT QDFFPAPALS LSLAGGFGRN EPAASGGEEV EFGDEGGGGI RLRPGEAAEI 60 SSENTAAGSQ SGGAWSGGEE AAGHGDDGGD NKRRKSYHRH NAEQIKAMEA VFKESPHPDE 120 KQRQQLSQEL GLSTRQVKFW FQNRRTQIKA TQERHENALL KSELEKLQEE NRAMRELAKK 180 SPRCPGCGAA AASTEEQQLR LENAMLRAEI ERLLGTLGNP AADKLAAPAS PSRSARAIQP 240 IGSGSGSVAD GCGGVVGLSG HDRTRILELA GRALCELTTM CSSGEPLWVR SVETGRDVLN 300 YDEHVRLFQC GDDPAGDQRA GWSVEVSRET GVVYLDTTQL VNAFMDVMFA EVQTLTPLIP 360 TREVHFLRHC KKLTADKWAV VDVSLEDVEL DAQTSSTACK CLKKPSGCVI EEQTNGRCKV 420 TWVEHATCRN AAVPSVYRPA AASGLAFGAR RWVAALRLQC ERMVFSMATN IPTRDSTGVA 480 TLAGRRSVLK LAHRMASSLC RVIGGSRDLA WSGVADWRRT SAAAAAALAT ASA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | PNIAATA | 7e-70 | D25322.1 Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818635.1 | 0.0 | homeobox-leucine zipper protein ROC9-like | ||||
Swissprot | Q5JMF3 | 0.0 | ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9 | ||||
TrEMBL | A0A2T8IK62 | 0.0 | A0A2T8IK62_9POAL; Uncharacterized protein | ||||
STRING | Si004904m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 1e-129 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01561.2 |