PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01561.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 534aa    MW: 57234.4 Da    PI: 7.6275
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01561.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.8e-2194149156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ +++++eq++++e++F+++++p++++r++L+++lgL++rqVk+WFqNrR++ k
  Pahal.E01561.2  94 RKSYHRHNAEQIKAMEAVFKESPHPDEKQRQQLSQELGLSTRQVKFWFQNRRTQIK 149
                     788999**********************************************9877 PP

2START108.51.1e-3434746293206
                     EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +m+ae q l+pl p R++ f+R++++l+a++w++vdvS++  +   + ss   ++ + pSg++ie+  ng++kvtwveh+ ++ + +++++r+  
  Pahal.E01561.2 347 VMFAEVQTLTPLIPtREVHFLRHCKKLTADKWAVVDVSLEDVELDAQtSSTACKCLKKPSGCVIEEQTNGRCKVTWVEHATCRNAAVPSVYRPAA 441
                     799************************************9887776669999******************************************* PP

                     HHHHHHHHHHHHHHTXXXXXX CS
           START 186 ksglaegaktwvatlqrqcek 206
                      sgla+ga++wva+l+ qce+
  Pahal.E01561.2 442 ASGLAFGARRWVAALRLQCER 462
                     *******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-2380145IPR009057Homeodomain-like
SuperFamilySSF466894.6E-2086155IPR009057Homeodomain-like
PROSITE profilePS5007117.94591151IPR001356Homeobox domain
SMARTSM003891.7E-1893155IPR001356Homeobox domain
CDDcd000861.91E-1894152No hitNo description
PfamPF000462.1E-1894149IPR001356Homeobox domain
PRINTSPR000318.4E-5122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000318.4E-5131147IPR000047Helix-turn-helix motif
PROSITE profilePS5084826.76259465IPR002913START domain
SuperFamilySSF559613.85E-21262462No hitNo description
CDDcd088758.85E-70265461No hitNo description
SMARTSM002342.0E-22268462IPR002913START domain
PfamPF018523.5E-29269462IPR002913START domain
Gene3DG3DSA:3.30.530.209.4E-4282304IPR023393START-like domain
Gene3DG3DSA:3.30.530.209.4E-4345429IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGSSRPPPRT QDFFPAPALS LSLAGGFGRN EPAASGGEEV EFGDEGGGGI RLRPGEAAEI  60
SSENTAAGSQ SGGAWSGGEE AAGHGDDGGD NKRRKSYHRH NAEQIKAMEA VFKESPHPDE  120
KQRQQLSQEL GLSTRQVKFW FQNRRTQIKA TQERHENALL KSELEKLQEE NRAMRELAKK  180
SPRCPGCGAA AASTEEQQLR LENAMLRAEI ERLLGTLGNP AADKLAAPAS PSRSARAIQP  240
IGSGSGSVAD GCGGVVGLSG HDRTRILELA GRALCELTTM CSSGEPLWVR SVETGRDVLN  300
YDEHVRLFQC GDDPAGDQRA GWSVEVSRET GVVYLDTTQL VNAFMDVMFA EVQTLTPLIP  360
TREVHFLRHC KKLTADKWAV VDVSLEDVEL DAQTSSTACK CLKKPSGCVI EEQTNGRCKV  420
TWVEHATCRN AAVPSVYRPA AASGLAFGAR RWVAALRLQC ERMVFSMATN IPTRDSTGVA  480
TLAGRRSVLK LAHRMASSLC RVIGGSRDLA WSGVADWRRT SAAAAAALAT ASA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPNIAATA7e-70D25322.1 Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818635.10.0homeobox-leucine zipper protein ROC9-like
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A2T8IK620.0A0A2T8IK62_9POAL; Uncharacterized protein
STRINGSi004904m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.11e-129HD-ZIP family protein