PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01336.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 746aa    MW: 80877.5 Da    PI: 6.7805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01336.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.91.1e-15106157556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++t+ q e+Le +F  + +p++++r +LA+ +gL   qVk+WFqN+R+  k
  Pahal.E01336.1 106 RRLTSRQAEILEGFFSVCAHPDETQRIQLAAMTGLGLHQVKFWFQNKRTHVK 157
                     5789********************************************9876 PP
2START84.42.5e-272634772204
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S........EE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla........ka 79 
                     +a +aa el+ + ++++p+W  ++    + +n++ + q f+ + +      + ea ras+vv  ++   ve l+d++  +   ++        + 
  Pahal.E01336.1 263 VAKSAAHELFILSDSSSPLWLAVPggsfQVLNRMAYAQMFPGQMGvgtigLTAEATRASAVVMLDPKSIVEFLMDSG-SFGPFFPglmsgaatST 356
                     78899999999*****************************665559*******************************.99999998888766666 PP

                     EEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  80 etlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                     ++++  ++      ga ql + e++++splvp R+ +f+Ry+++l+ g  ++vdvS+d  +k         +++ pSgili+p   + +kvt +e
  Pahal.E01336.1 357 KVYNWPQNSeagydGAMQLLTVEMVFPSPLVPvRKCTFLRYCKRLELGAMAVVDVSLDDGAK---------CQKMPSGILIQPIRHNSCKVTAIE 442
                     666666666999********************************************998766.........889********************* PP

                     -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
           START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                     hv ++g+  h+l++  + sgl +ga++wv  + rq 
  Pahal.E01336.1 443 HVRVDGSGTHELFQACL-SGLLFGARRWVMSMARQS 477
                     *************9887.79*********9888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-1686153IPR009057Homeodomain-like
SuperFamilySSF466892.51E-1693158IPR009057Homeodomain-like
PROSITE profilePS5007114.25299159IPR001356Homeobox domain
SMARTSM003893.1E-1499163IPR001356Homeobox domain
CDDcd000863.10E-13100158No hitNo description
PfamPF000462.8E-13106157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084819.335253482IPR002913START domain
CDDcd088759.33E-69258478No hitNo description
SMARTSM002344.9E-8262479IPR002913START domain
PfamPF018522.6E-19263477IPR002913START domain
SuperFamilySSF559611.07E-14267475No hitNo description
SuperFamilySSF559613.98E-7521711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MGIDEPSGGH PCFMESTSGI GDSSLIGPPS SVVVGLSSNR NETSEKNSSS YFGELHKNNG  60
HGEIPGDGVS GINEVNLSIL VSNKNGSGKS PGDGQDGPQP KKRCLRRLTS RQAEILEGFF  120
SVCAHPDETQ RIQLAAMTGL GLHQVKFWFQ NKRTHVKHLS GKEENYRLKV ENEMLREEND  180
MFKQAQNNAL CPRCTNDPGF LQILKELEQV KAQNQMLQQE LQQMRIDNEA RLTMRPPIRV  240
FHLEPSSGNA FGMQDEVQAL TEVAKSAAHE LFILSDSSSP LWLAVPGGSF QVLNRMAYAQ  300
MFPGQMGVGT IGLTAEATRA SAVVMLDPKS IVEFLMDSGS FGPFFPGLMS GAATSTKVYN  360
WPQNSEAGYD GAMQLLTVEM VFPSPLVPVR KCTFLRYCKR LELGAMAVVD VSLDDGAKCQ  420
KMPSGILIQP IRHNSCKVTA IEHVRVDGSG THELFQACLS GLLFGARRWV MSMARQSARL  480
RDVFHVTNCT LDVTSRGRKA IMKLADNLLA NYTGSIAGLP ADDWSVQCGE GTEEDVKIAY  540
RRNDDGSNTA IVCTSATFLL PLPMRMVFDL LKSNLLRVKW DVLVNGGCVK EVVRVANGVG  600
SEDAVSILHV KHGSGANKET MMILQNSCYD ASGSFMVYSS LDKHVMEMIT SPGGEEAMSN  660
IALFPAGFSL VPLADPANAG SPIGEAGGTV MTAGFQILMK LARGTGLCPR SVSSAIKIMT  720
EHIEAIKDTL QNSHPVFYKT IQSPN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814677.10.0homeobox-leucine zipper protein TF1-like
SwissprotQ5ZAY00.0TF1_ORYSJ; Homeobox-leucine zipper protein TF1
TrEMBLA0A2S3HQY20.0A0A2S3HQY2_9POAL; Uncharacterized protein
STRINGPavir.Eb03442.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104752833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-114protodermal factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]