PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01230.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 437aa    MW: 47920.8 Da    PI: 6.9008
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01230.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.71.4e-09151191545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  Pahal.E01230.3 151 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 191
                     7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-8147210IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.312149193IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-7151194No hitNo description
CDDcd147083.66E-22151203No hitNo description
PfamPF001709.1E-7151191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-7152195No hitNo description
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
PfamPF141446.5E-33233308IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MNNMQPSRVT DFGALAQSAG FRIEDLANLN TSTLFNLKPN THTINNNPLQ FGSYGKPISP  60
SHINATTAAT AAARIDPQSL EQQTGAQQNL VALPTGNIEN WGESAMADSP MTDTSTDPDT  120
DERNQMFEQG LVAGPTASDS SDKSRDKLDQ KTLRRLAQNR EAARKSRLRK KAYIQNLESS  180
RLKLTQLEQE LQRARQQGIF ISTSGDQPQS ANGNGALAFD MEYARWLEEH NKHVNELRAA  240
VNAHAGDNDL RGIVDSIMAH YDEIFRLKGV AAKADVFHVL SGMWKTPAER CFMWLGGFRS  300
SELLKLLAGQ LEPLTDQQLV GISNLQQSSQ QAEDALSQGM EALQQALAET LASGSLGPAG  360
SSGNVANYMG QMAMAMGKLG TLENFLRQAD NLRLQTLQQM QRILTTRQSA RALLAISDYF  420
SRLRALSSLW LARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344560.0BT034456.1 Zea mays full-length cDNA clone ZM_BFc0173A06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816951.10.0transcription factor TGAL1 isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2T7DFE80.0A0A2T7DFE8_9POAL; Uncharacterized protein
TrEMBLA0A2T8IJQ60.0A0A2T8IJQ6_9POAL; Uncharacterized protein
STRINGSb03g037560.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-133bZIP family protein