PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01151.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 325aa    MW: 34404.6 Da    PI: 5.9096
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01151.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.81.1e-18124184359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                     Dgy+WrKYGqK ++++++pr YYrC+++   gC+++k+v+++   dp    ++Y ++H+++
  Pahal.E01151.1 124 DGYQWRKYGQKRITKTHYPRCYYRCSFHrerGCRATKQVQQCGgGDPPQYLVMYFNDHTCD 184
                     9*************************998999*******998636999**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-22107185IPR003657WRKY domain
SuperFamilySSF1182902.09E-20117185IPR003657WRKY domain
SMARTSM007747.1E-29122185IPR003657WRKY domain
PfamPF031061.2E-20124184IPR003657WRKY domain
PROSITE profilePS5081116.868124186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQAQSRLGVS GGGGMSASED EHEAVIRELT RGRQLTARLR AEALRALRGQ GQAEATAALI  60
LQEVSRAFTV CLNIMGSPAS APPPPEMPGV DAAAAVPFSL APPRRNREDS IPREQTVTTS  120
PYYDGYQWRK YGQKRITKTH YPRCYYRCSF HRERGCRATK QVQQCGGGDP PQYLVMYFND  180
HTCDTAAWEP EAAAGASAAM RLDLPGAALV APRRGGLLDE RGVQEEHERQ VLVSSLACVL  240
GGQQQFHHQY PPDAPAAAGS SAAAAAVNVA QAAGPAPIVD AAAGMPRLDV DVVGLDVMDY  300
DDVPGELCFG DSYGLPGGGG GLPF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638612e-75BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564872e-75EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699482e-75JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818129.10.0probable WRKY transcription factor 64
TrEMBLA0A2S3HQJ00.0A0A2S3HQJ0_9POAL; Uncharacterized protein
STRINGPavir.Ea03257.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.16e-17WRKY DNA-binding protein 38