 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.E01007.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WOX |
| Protein Properties |
Length: 331aa MW: 34466.8 Da PI: 9.4237 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E01007.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.6 | 2.8e-20 | 41 | 100 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++tkeq+ +Le l+e r+psae++++++++l +++ ++V++WFqN++a++++
Pahal.E01007.1 41 SRWNPTKEQVAVLEGLYEHgLRTPSAEQIKQITARLrehgHIEGKNVFYWFQNHKARQRQ 100
7*****************99**************************************96 PP
|
| 2 | Wus_type_Homeobox | 113.1 | 1.4e-36 | 40 | 102 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
++RW+Pt+eQ+ +Le ly++GlrtP++e+i++ita+L+e+G+ie+kNVfyWFQN+kaR+rqkq
Pahal.E01007.1 40 NSRWNPTKEQVAVLEGLYEHGLRTPSAEQIKQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 102
79***********************************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008284 | Biological Process | positive regulation of cell proliferation |
| GO:0009942 | Biological Process | longitudinal axis specification |
| GO:0010654 | Biological Process | apical cell fate commitment |
| GO:0048825 | Biological Process | cotyledon development |
| GO:0080167 | Biological Process | response to karrikin |
| GO:0090451 | Biological Process | cotyledon boundary formation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MEAPQQGGGG ALGLEGPGGA GAPLSPPLSP ASAAAAALAN SRWNPTKEQV AVLEGLYEHG 60
LRTPSAEQIK QITARLREHG HIEGKNVFYW FQNHKARQRQ KQKQDSFAYF TRLLRRPPPL 120
PVLVSPPGPP YPHGRLPVPA APAMTMAPSP AAAAAAAAAA CNTSNGGTHV MYRAPFYMAA 180
PQAPAANAAY YHTVQEQQQQ QPWPVMYPRM AVAQDKMIPA AAMQHQQPPS HPGGAAYQAA 240
AAPGNAPLHV VHLPAADAGG PSRETLQLFP LQPTFLLPDK GRPPTAAGTP ASTASASFSG 300
ESESPGSPDS NGDAPAVPFY DFFGLQSGGR *
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM490235 | 1e-127 | AM490235.1 Zea mays mRNA for putative wuschel homeobox protein (wox2A gene). |
| GenBank | BT037009 | 1e-127 | BT037009.1 Zea mays full-length cDNA clone ZM_BFb0151I01 mRNA, complete cds. |
| GenBank | EU954062 | 1e-127 | EU954062.1 Zea mays clone 1453569 homeobox domain containing protein mRNA, complete cds. |
| GenBank | KJ728384 | 1e-127 | KJ728384.1 Zea mays clone pUT6667 HB transcription factor (HB94) mRNA, partial cds. |
