PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 35652.4 Da PI: 5.7864 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2e-31 | 152 | 208 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s++dp+++++tYeg H h Pahal.E00987.1 152 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTDDPEMLVVTYEGPHLH 208 7******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-29 | 148 | 209 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 149 | 210 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-35 | 151 | 210 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.737 | 152 | 211 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-26 | 153 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGDVLHPQAG TGDVQALWPG DLDEQLITEL LSDDSLLLGA LHPDPGGDSE HCSRDTGASP 60 AAAPAPCDSG GGGAAEQEEL LPQPEAVSRA LCSVYTGPTI RDIEMALSTS RPSYPWSSRR 120 YSPMHLRFGA ASRAPESKYT TKVRSCGGKT PSDGYKWRKY GQKSIKNNPH PRSYYKCTSS 180 RCGAKKHVEK STDDPEMLVV TYEGPHLHGP QPLFPRRQWA SVDLSGAAAA AAAKKQVKTP 240 SPAASSAAPA RASDDAGGWP PNDDHYQMTC GGDAGEAPGN GRAEDAAARR HLAAAADSCD 300 GGSTASVAAA TVLTCDDSPP TAWSCPDFPF AWSPEAPLLL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-21 | 153 | 208 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-21 | 153 | 208 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362686 | 9e-56 | AK362686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009G15. | |||
GenBank | DQ863130 | 9e-56 | DQ863130.1 Hordeum vulgare WRKY transcription factor 36 (WRKY36) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970545.1 | 1e-154 | WRKY transcription factor WRKY24 isoform X1 | ||||
TrEMBL | A0A2T7DEI5 | 0.0 | A0A2T7DEI5_9POAL; Uncharacterized protein | ||||
STRING | Sb03g039550.1 | 1e-131 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 4e-29 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00987.1 |