 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.E00845.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NAC |
| Protein Properties |
Length: 267aa MW: 28752.9 Da PI: 5.1666 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E00845.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 135.9 | 2.7e-42 | 6 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+P +Lp ++e + w++F++r++++++g r++r+t sgyWka g+
Pahal.E00845.1 6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPGQLPGihemlcGGAGEGEPWFYFCPRQERETRGGRPSRTTPSGYWKAAGTP 100
79****************************99****************545665422336779******************************** PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
v+s+ +++++g+kkt+vfy+grap+g kt+W m+eyr+
Pahal.E00845.1 101 GVVYSSaDRRAIGVKKTMVFYRGRAPSGAKTNWKMNEYRA 140
****9978889***************************95 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPG QLPGIHEMLC 60
GGAGEGEPWF YFCPRQERET RGGRPSRTTP SGYWKAAGTP GVVYSSADRR AIGVKKTMVF 120
YRGRAPSGAK TNWKMNEYRA LQYYAAPAAA GTDGSPSSAH AHAAAARPNV PPQLRSEFSL 180
CRLYTRSGTL RQFDRRPLAA AAGVPGEDPG PSTAAAASPP EDDDGSGSSM QQQQQQLVAE 240
RGSADDPYGD DAAILDALLY WPGDET*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 3swm_B | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 3swm_C | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 3swm_D | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 3swp_A | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 3swp_B | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 3swp_C | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 3swp_D | 6e-31 | 1 | 142 | 15 | 147 | NAC domain-containing protein 19 |
| 4dul_A | 5e-31 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 5e-31 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK071274 | 1e-138 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
