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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 379aa MW: 38527.9 Da PI: 6.2297 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.8e-20 | 155 | 204 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g Pahal.E00809.1 155 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 204 7********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.686 | 155 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 155 | 213 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-13 | 155 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-22 | 155 | 213 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-36 | 155 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 156 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-14 | 163 | 214 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 178 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MCFELADQRG AQRAGAGAGA WPVKGGGGGQ QDERAAAGMA MAGVCPGEVM SEYHQARELS 60 TMVSALAHVV AGGPWGDEAP APRGSGGAPE QQAMHGGYVR EVGSYHHSAP SPEFAGSEQG 120 SDTQSAGAAA AAAAMEEHHA AALSGQEGPE TPRRRYRGVR QRPWGKWAAE IRDPHKAARV 180 WLGTFETAEA AARAYDEAAL RFRGSRAKLN FPEDARLHPA STAAAAPPAS APLAGAAAST 240 SPPGYHAGAA QGADYLRYQM LLQGATGNQG TLLPFYGGGG GMSNLYGGGG GAMSNPYGGG 300 GGGGGNTSGF LGSYYSFPPS SVSVATVPSS ASSASGYYYS SSYDSHQSES SAPASDWNWE 360 TSLLNWSDAG YPPPPHSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-23 | 156 | 212 | 6 | 63 | ATERF1 |
3gcc_A | 4e-23 | 156 | 212 | 6 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816726.1 | 0.0 | glycine, alanine and asparagine-rich protein-like | ||||
TrEMBL | A0A2S3HPU2 | 0.0 | A0A2S3HPU2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03755.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6232 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-19 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00809.1 |