PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 518aa MW: 56525.1 Da PI: 5.6059

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00790.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	279	300	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Pahal.E00790.1 279 FCLICGKGFKRDANLRMHMRGH 300 5*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.96E-5	276	304	No hit	No description
PROSITE profile	PS50157	11.552	278	305	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	278	300	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	280	300	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.7E-5	280	304	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	71	327	360	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	22	365	387	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MEGGMSSLET AMKASSSVAS GTARNADPDQ QTVRSNSVEQ FYFPRPGQSL PGIPPFFGPP 60 SSSLYLANDN EAKVGNQFEP NPSQSTDWDP QAIVSNLTFL EQKIKQVKDV VQSISSRENQ 120 VAGGSCELAA KQQLITADLT SIIIQLITTA GSLLPSMKNP LSSNPAVRQL SNTLGSPMGF 180 GMNANQRPSV DSKTDIPDIG KASGYEELIN SLNTTQDERD DLIKCPNPCG GEGSEPTPME 240 DHDVKESDDG DHEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH 300 GDEYKTAAAL AKPTKDSGSD HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH 360 CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPA 420 LPMDDVKVSE ASEQQQDSEP MNEISRSMGC FPCSSSDGIS NLDMKMADDA RGYYSPLSFD 480 PCFGALDDFT RPGFDISEDP FSFLPSGCSY VQQNGDN*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MEGGMSSLET AMKASSSVAS GTARNADPDQ QTVRSNSVEQ FYFPRPGQSL PGIPPFFGPP  60
SSSLYLANDN EAKVGNQFEP NPSQSTDWDP QAIVSNLTFL EQKIKQVKDV VQSISSRENQ  120
VAGGSCELAA KQQLITADLT SIIIQLITTA GSLLPSMKNP LSSNPAVRQL SNTLGSPMGF  180
GMNANQRPSV DSKTDIPDIG KASGYEELIN SLNTTQDERD DLIKCPNPCG GEGSEPTPME  240
DHDVKESDDG DHEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH  300
GDEYKTAAAL AKPTKDSGSD HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH  360
CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPA  420
LPMDDVKVSE ASEQQQDSEP MNEISRSMGC FPCSSSDGIS NLDMKMADDA RGYYSPLSFD  480
PCFGALDDFT RPGFDISEDP FSFLPSGCSY VQQNGDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184734	0.0	KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence.
GenBank	KF184941	0.0	KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819567.1	0.0	zinc finger protein STOP1 homolog
Swissprot	Q943I6	0.0	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2S3HPR3	0.0	A0A2S3HPR3_9POAL; Uncharacterized protein
STRING	Pavir.J14096.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-154	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.E00790.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]