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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.E00688.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 269aa MW: 29814.6 Da PI: 9.2357 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.E00688.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.7 | 8.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtf+kRrng+lKKA+ELS+LCdae+a++ifss+g+lyeyss
Pahal.E00688.1 9 KRIENTTSRQVTFCKRRNGLLKKAYELSILCDAEIALVIFSSRGRLYEYSS 59
79***********************************************96 PP
|
| 2 | K-box | 106.9 | 2.4e-35 | 80 | 174 | 8 | 100 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ ++ + +++ qqe+akL ++i++Lq+++Rhl+Ge++++++ keL+++e++Le+++ +iRskK+elll+ ie++qk+e elq+en+ Lr+k++e
Pahal.E00688.1 80 ApvVDVNSHQYFQQEAAKLHQQIQTLQNSNRHLMGESIGNMTAKELKSIESRLERGIGRIRSKKHELLLADIEYMQKREAELQSENMFLRAKVAE 174
445778899***********************************************************************************986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.571 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.00E-45 | 2 | 75 | No hit | No description |
| SuperFamily | SSF55455 | 2.35E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.2E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 7.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.2E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.2E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 7.0E-28 | 85 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.861 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSILCD AEIALVIFSS RGRLYEYSSN 60
SVRSTIERYK KASASTSGTA PVVDVNSHQY FQQEAAKLHQ QIQTLQNSNR HLMGESIGNM 120
TAKELKSIES RLERGIGRIR SKKHELLLAD IEYMQKREAE LQSENMFLRA KVAEAERAQQ 180
EAAEDQQMAP PPDVAEATTE LQALPASLDP RGYYLQAQAS MMAAASAAAA SSSSQHQQGQ 240
QEHHHLQTAL HLGYHIKVDS AAASKGFL*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 5f28_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 5f28_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 5f28_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
| 6c9l_A | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-20 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
