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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00617.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 856aa MW: 95552.6 Da PI: 7.9567 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.6 | 1.2e-53 | 16 | 128 | 5 | 117 |
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 k+rwlk++e+++iL n++ + ++++++++p+sgs++L+nr+++ryfr+DGy+w+kkk+gktv+E+he+LKv++v++l+cyYa++++nptfqrr+y Pahal.E00617.3 16 KTRWLKPQEVLQILRNHDLFMVSHKPPQKPPSGSWFLFNRRVLRYFRNDGYEWQKKKNGKTVNEAHERLKVDNVDALNCYYARGDKNPTFQRRIY 110 89********************************************************************************************* PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ ++e+ivlvhy++v Pahal.E00617.3 111 WMLDPAYEHIVLVHYRDV 128 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.583 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.0E-66 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.9E-49 | 16 | 128 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.82E-11 | 310 | 393 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 4.8E-6 | 310 | 395 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 3.82E-4 | 311 | 395 | No hit | No description |
CDD | cd00204 | 9.85E-9 | 482 | 564 | No hit | No description |
SuperFamily | SSF48403 | 2.33E-13 | 503 | 606 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 7.3E-10 | 516 | 568 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.3E-14 | 519 | 611 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.194 | 519 | 579 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.927 | 547 | 579 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.3E-4 | 547 | 576 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 6.11E-8 | 671 | 761 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.0066 | 710 | 732 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.309 | 711 | 740 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 712 | 731 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0017 | 733 | 755 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.578 | 734 | 762 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.002 | 735 | 755 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MQQQGLDVHK LQQVVKTRWL KPQEVLQILR NHDLFMVSHK PPQKPPSGSW FLFNRRVLRY 60 FRNDGYEWQK KKNGKTVNEA HERLKVDNVD ALNCYYARGD KNPTFQRRIY WMLDPAYEHI 120 VLVHYRDVLE GSISVSARND SSTSNQNGSA SRAEVHSSPG WTSEFVLPCP NSSSPGSAEE 180 VSSRTVTINN ETNRSGSDWI QHKAALRKLE MQLSLEDKED SNVLAEEVPT NIEHVIVPGI 240 QTGEPGSSAN FEDIFNVLDF SRDHTKENGT DPCPSAIDVL KNSDTWLEED QLEAILHPAS 300 MAPTENLWFN IHEVSPESAF SSEITKVIVL GDFLCNPSHS SLAMLFGDVK VPVEIIQQGA 360 IRCHTPCLNA GKVSMCLIDG NGKPCSEARE FEFHEKPTKS MVDGNEKPCN EAQDIKVHKT 420 PTKSNDELLL LLNYVQILFG HGCDVFSKFS PQLPNPGCGF LVNQMDIMRK TYEQLDPEKT 480 VYSVMEVLLN DKFKQWLLSK CEQNSDGNHL LPKQYHGVIH TIAALGYDLA LKPLLSSGVP 540 INYRDGNGWT ALHWAARFGR EDMVVALLTA GAAAGALSHP TSEDPAAKTP ASIALAFGFK 600 GLSAFLSEEQ LTTHLDSIES KENGKCEGNA SGGGIRSAVD RISDKSTHVH GGTDDQLALK 660 DSLGAVRNAV QAAARIQAAF RVFSFKKKKE TALQNSCLSV HETVAVSHGM LERAALSIQK 720 NFRCWKKRKE FLKLRKNVIK IQARVRAHQE RKKYKELIRS VGVLEKVMLR WYRKGVGLRG 780 FNSGAMPVDE EVEEDVAKVF RKLRVETAID EAVSRVSCII GSPKAMQQYR RMLQRYQQAK 840 VNIPKDASEV PTSKG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816190.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X1 | ||||
TrEMBL | A0A2S3HNI7 | 0.0 | A0A2S3HNI7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03014.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-98 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00617.3 |