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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00617.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 832aa MW: 93007.5 Da PI: 8.0861 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.6 | 1.1e-53 | 16 | 128 | 5 | 117 |
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 k+rwlk++e+++iL n++ + ++++++++p+sgs++L+nr+++ryfr+DGy+w+kkk+gktv+E+he+LKv++v++l+cyYa++++nptfqrr+y Pahal.E00617.2 16 KTRWLKPQEVLQILRNHDLFMVSHKPPQKPPSGSWFLFNRRVLRYFRNDGYEWQKKKNGKTVNEAHERLKVDNVDALNCYYARGDKNPTFQRRIY 110 89********************************************************************************************* PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ ++e+ivlvhy++v Pahal.E00617.2 111 WMLDPAYEHIVLVHYRDV 128 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.583 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.0E-66 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.7E-49 | 16 | 128 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00204 | 9.49E-9 | 458 | 540 | No hit | No description |
SuperFamily | SSF48403 | 2.33E-13 | 479 | 582 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 7.0E-10 | 492 | 544 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.1E-14 | 495 | 587 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.194 | 495 | 555 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3.3E-4 | 523 | 552 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.927 | 523 | 555 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 5.58E-8 | 647 | 737 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.0066 | 686 | 708 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.309 | 687 | 716 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.014 | 688 | 707 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0017 | 709 | 731 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.578 | 710 | 738 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0019 | 711 | 731 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence Send to blast |
MQQQGLDVHK LQQVVKTRWL KPQEVLQILR NHDLFMVSHK PPQKPPSGSW FLFNRRVLRY 60 FRNDGYEWQK KKNGKTVNEA HERLKVDNVD ALNCYYARGD KNPTFQRRIY WMLDPAYEHI 120 VLVHYRDVLE GSISVSARND SSTSNQNGSA SRAEVHSSPG WTSEFVLPCP NSSSPGSAEE 180 VSSRTVTINN ETNRSGSDWI QHKAALRKLE MQLSLEDKED SNVLAEEVPT NIEHVIVPGI 240 QTGEPGSSAN FEDIFNVLDF SRDHTKENGT DPCPSAIDVL KNSDTWLEED QLEAILHPAS 300 MAPTENLWFN IHEVSPESAF SSEITKVPVE IIQQGAIRCH TPCLNAGKVS MCLIDGNGKP 360 CSEAREFEFH EKPTKSMVDG NEKPCNEAQD IKVHKTPTKS NDELLLLLNY VQILFGHGCD 420 VFSKFSPQLP NPGCGFLVNQ MDIMRKTYEQ LDPEKTVYSV MEVLLNDKFK QWLLSKCEQN 480 SDGNHLLPKQ YHGVIHTIAA LGYDLALKPL LSSGVPINYR DGNGWTALHW AARFGREDMV 540 VALLTAGAAA GALSHPTSED PAAKTPASIA LAFGFKGLSA FLSEEQLTTH LDSIESKENG 600 KCEGNASGGG IRSAVDRISD KSTHVHGGTD DQLALKDSLG AVRNAVQAAA RIQAAFRVFS 660 FKKKKETALQ NSCLSVHETV AVSHGMLERA ALSIQKNFRC WKKRKEFLKL RKNVIKIQAR 720 VRAHQERKKY KELIRSVGVL EKVMLRWYRK GVGLRGFNSG AMPVDEEVEE DVAKVFRKLR 780 VETAIDEAVS RVSCIIGSPK AMQQYRRMLQ RYQQAKVNIP KDASEVPTSK G* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816192.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X2 | ||||
TrEMBL | A0A2S3HNJ2 | 0.0 | A0A2S3HNJ2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03014.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 7e-84 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00617.2 |