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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00535.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 488aa MW: 51057 Da PI: 6.5085 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 292 | 339 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Pahal.E00535.1 292 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 339 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-16 | 286 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.34E-10 | 286 | 343 | No hit | No description |
PROSITE profile | PS50888 | 15.256 | 288 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 290 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 292 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 294 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MNCGPPDQLP PASAPSAPSC FLNLNWDQSM AAAAAGDHLD PALSSMVSSP ASNSTAAAAT 60 DGLALHGISP QPQYGGTPLS SPPKLNLSMM GQFHHYQPPQ VGGAGPGGLP ILENLMPMGH 120 LDQFLADPGF AERAARLSGF DGRPGGSGYG GAVPGQFGLP DAGPVGALKE LELGNGRDES 180 SVSDPASASA EMALKGPSDG NAKKRKASGK GKGKDGPGST AAKDPAKEES SGKRCKSADE 240 SNGAEDNSGK GKAAQSNSEN GGKKQGKDTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR 300 REKISQRMKL LQDLVPGCNK VVGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN 360 LPNLLPKDIH QSCGPMQNSH FPLETSGAPL PYLNQSHQGS PLGCSLTNGM DNQSNMHPLD 420 PAFCRQMNSQ HPFLNGVSDA ASQVGTFWQD DLQSVVHMDI GQGQEIAATS SNSYNGSLQT 480 VHMKMEL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818693.1 | 0.0 | transcription factor bHLH77-like | ||||
TrEMBL | A0A2S3HNR5 | 0.0 | A0A2S3HNR5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03809.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 5e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00535.1 |