PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00520.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 430aa    MW: 45967.4 Da    PI: 5.538
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.7e-141252444
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    +    r+ tf  R++g+ KKA ELSvLC+++vav+ +++ g
  Pahal.E00520.1 12 DKAGSRTRTFKGRKEGLKKKARELSVLCGVDVAVVCAGPGG 52
                    55667999****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-15160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-19180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47152IPR002100Transcription factor, MADS-box
CDDcd002664.81E-23380No hitNo description
PRINTSPR004044.7E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPRRKIQMAL IDKAGSRTRT FKGRKEGLKK KARELSVLCG VDVAVVCAGP GGGAPDVWEF  60
GSAGVLGRYR RLPADKRAKH THLNYLNVEL GKVRKEKAKL AKERQEGPKK LASPGAALLK  120
GMNPEELLGS IDAALLATAQ RRKALGMPDG GQLGQGAPLV GDGLDDDMEA WINELTWHGV  180
EQNPLDASMT MQPAASGGPY INGGSLDMGG NQYLQQMGGN GENGHGQQPW DAYHLHNTVV  240
SCPDYGFHYT DSNCSYSGMA GCPQMPVPSN AIAYDGCWFD QAMWGAHESP RDAVVPAEYY  300
HPSLDITCNP AYMPPEHSGM GAGDYFTGVS AIGLDGGGFM DASGHGYGTQ CLADYFQCPD  360
ATQQYGDEPL HYLSDVADGI LGCSSGTSEL FAHSHSSSGA LQFSSEKFQS DVRDQDSGVQ  420
KYWVMEGFN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3HNS30.0A0A2S3HNS3_9POAL; Uncharacterized protein
STRINGPavir.J13519.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.16e-08AGAMOUS-like 46