PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00511.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 318aa MW: 34594.9 Da PI: 4.8097

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00511.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32	1.6e-10	18	53	9	44
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r f kR+ g+ KAeELS+ C+++vav+ ++ g Pahal.E00511.1 18 RLARFMKRKDGLKRKAEELSTRCAVDVAVVCTGPGG 53 55679**************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0016	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.325	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-14	11	89	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-11	16	54	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MTRGKVGSVR AAVNLRDRLA RFMKRKDGLK RKAEELSTRC AVDVAVVCTG PGGRGDPDCW 60 PSKEAATEVA RRYSALDPAQ RAKHTEDHAA GVARRLAEER DKLVRAREGG VPGSLGSWDG 120 SLEGVSEEKL RELLASIDGS LVAVKNRVLE LQAPLGAAAD RATLWSVLVH DDNDIFVPPH 180 GEADAGGGGL HPPPSKNPNS PNAVPVDAGE EVVAENIVTA EDAGDEVQML QPPRDADEWM 240 RGPVDDIKKR PQPYNPAAYD TRIQYISVGR FMMELDTYEF IRFDLGMPPP CIAPNSLDDD 300 DGEPLKLWSW DNTMPRF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819832.1	0.0	uncharacterized protein LOC112896014
TrEMBL	A0A2S3HNT5	0.0	A0A2S3HNT5_9POAL; Uncharacterized protein
STRING	Pavir.J11719.1.p	1e-160	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15877	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26650.1	2e-12	AGAMOUS-like 36

Link Out ? help Back to Top
Phytozome	Pahal.E00511.1