PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00508.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 685aa    MW: 72366 Da    PI: 6.3153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00508.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19515611295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ eFv++n+L+egDf+v++  ++ +++
  Pahal.E00508.1 515 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SDvKSG 606
                     79*************************999***********7778*******99777777777777.********************..555888 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  Pahal.E00508.1 607 KYLIR 611
                     77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-27508619IPR015300DNA-binding pseudobarrel domain
CDDcd100159.12E-32512613No hitNo description
SuperFamilySSF1019363.01E-22513609IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.532514616IPR003340B3 DNA binding domain
SMARTSM010191.3E-18514616IPR003340B3 DNA binding domain
PfamPF023626.0E-16515610IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDASAGSSPP HSQENPPEHG GDLGEAPAEE IGGEAADDFL FAEDTFPSLP DFPCLSSPSS  60
STFSSSSSSN SSCAYTNAAG GAGGGADGAA GERSGPVSAG EGFDALDDID QLLDFASLSM  120
PWDSEPTFPE VSMMLEDAMF PPPHPVGDGR REGKAVLEGT GGEEACMDAG AAGEDLPRFF  180
MEWLTSNREN ISAEDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW VQNHHLQRKR  240
PRDALEEAAG LHGHGHSQLS SPGANPGYEF PAGGQDMAAG GGTSWMPYQQ PFTPPAYGGD  300
AVYPGAAGQY PFHQSSSTSS VVVNSQPFSP PAVGDMHAAG GGNMAWTQQY VPFPGASTGS  360
YPMPPVVPQP FSPGFGGQYA GAGHPMPPSS WQAWRPPRPR RPQQRSQQLN LGQIQVPVLQ  420
HEPSARSTNS APVTPSGGGW GFWPPGSQQQ VQNPLSKSNS SRAPMQQVPR SPEAAAPPSA  480
KPAPGARQDE SPQRSTASDK RQGAKTDKNL RYLLQKVLKQ SDVGSLGRIV LPKKEAEVHL  540
PELKTRDGIS IPMEDIGTSR VWNMRYRFWP NNKSRMYLLE NTGEFVRSNE LQEGDFIVIY  600
SDVKSGKYLI RGVKVRPAQE QQGNGSSAVG KHKHGYPGPE KAGGASDEGG ADGASKPDGG  660
CKGRSSQGVR RARHQGAASM AVSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-375106201111B3 domain-containing transcription factor FUS3
6j9b_D5e-375106201111B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSBISVP10.0AF148558.1 Sorghum bicolor insertion sequence IS9530 ISVP1 (ISvp1) gene sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816909.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLA0A2T8IIY40.0A0A2T8IIY4_9POAL; Uncharacterized protein
STRINGSi000497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-64B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]