PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00168.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 443aa    MW: 48146.9 Da    PI: 6.5729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00168.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.11.6e-124484371374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e +aa++ f +++P+l+++
  Pahal.E00168.1  48 LIHLLLNCAAAAAAGRLDAANAALEHIASLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAAP--TAAELAAARRHFLDLCPFLRLA 140
                     689************************************************************95455554..689999999************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       +aNq Ilea+e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp++R+T+v++    +k+ l +t+  L+k Ae+l+vpf+fn+ v++rl++l
  Pahal.E00168.1 141 GAAANQSILEAMESEKIVHVIDLGGADATQWLELLHLLAARPEGPPHFRLTAVHE----HKDVLTQTAMVLTKEAERLDVPFQFNP-VVSRLDAL 230
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrll......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                     ++e+Lrvk+gEala+ ++lqlh ll                      +   +++s+ d++L ++++lsPkv+vv+eqea+hn++ + erf+eal+
  Pahal.E00168.1 231 DVESLRVKTGEALAITSSLQLHCLLasdddsaangkdsnskdrrspeSGLSPSTSRADAFLGALWGLSPKVMVVTEQEASHNAAALTERFVEALN 325
                     ******************************************9997522233344789************************************* PP

            GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                     yy+alfd+le+ ++r s er+ vEr llg+ei+n+vaceg errerhe+l +W +r+e aGF+ vpls++a  qa++  +  + dg++v ee+gs
  Pahal.E00168.1 326 YYAALFDCLEVVAARGSVERARVERWLLGEEIKNIVACEGGERRERHERLDRWAARMEGAGFGRVPLSYYALLQARRAAQALGCDGFKVREEKGS 420
                     *********************************************************************************************** PP

            GRAS 358 lvlgWkdrpLvsvSaWr 374
                     ++l+W++r+++svSaWr
  Pahal.E00168.1 421 FFLCWQERAIFSVSAWR 437
                     ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.89222417IPR005202Transcription factor GRAS
PfamPF035145.6E-12248437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVQDEGSSSS VTSSPLHNFS NMPLHPAAAP TPPWLLRELR SDERGLCLIH LLLNCAAAAA  60
AGRLDAANAA LEHIASLAAP DGDAMQRVAA AFAEALARRA LRAWPGLCRA LLLPRAAPTA  120
AELAAARRHF LDLCPFLRLA GAAANQSILE AMESEKIVHV IDLGGADATQ WLELLHLLAA  180
RPEGPPHFRL TAVHEHKDVL TQTAMVLTKE AERLDVPFQF NPVVSRLDAL DVESLRVKTG  240
EALAITSSLQ LHCLLASDDD SAANGKDSNS KDRRSPESGL SPSTSRADAF LGALWGLSPK  300
VMVVTEQEAS HNAAALTERF VEALNYYAAL FDCLEVVAAR GSVERARVER WLLGEEIKNI  360
VACEGGERRE RHERLDRWAA RMEGAGFGRV PLSYYALLQA RRAAQALGCD GFKVREEKGS  420
FFLCWQERAI FSVSAWRGRR FD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-63364397381Protein SCARECROW
5b3h_A2e-63364396380Protein SCARECROW
5b3h_D2e-63364396380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0975350.0FP097535.1 Phyllostachys edulis cDNA clone: bphylf044j19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819415.10.0scarecrow-like protein 3
RefseqXP_025819416.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-168SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2S3HN370.0A0A2S3HN37_9POAL; Uncharacterized protein
TrEMBLA0A2T7DBR70.0A0A2T7DBR7_9POAL; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-121scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]