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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.D02874.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GRF |
| Protein Properties |
Length: 326aa MW: 34498.4 Da PI: 9.2315 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.D02874.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 76.9 | 2e-24 | 87 | 130 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44
d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg+srsrk++e
Pahal.D02874.1 87 DPEPGRCRRTDGKKWRCSREAHGDSKYCEKHIHRGKSRSRKPVE 130
79***************************************998 PP
|
| 2 | QLQ | 61 | 3.3e-21 | 14 | 48 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
FTa+Q+q+L++Q+l+yKy+a+++PvP++L+++++
Pahal.D02874.1 14 LFTASQWQELEHQALIYKYMASGAPVPHDLVLPLR 48
5*******************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MMLSGHGGGG GRRLFTASQW QELEHQALIY KYMASGAPVP HDLVLPLRLA TGVDTAPSLA 60
FPPQTSPSLG YWGCYGAGAP FGRKAEDPEP GRCRRTDGKK WRCSREAHGD SKYCEKHIHR 120
GKSRSRKPVE AVASSATSPA AAGYRPSALS ISPPRAPDAA PGFGHHHHQQ PHHGASSARA 180
PVHQAAAGAP LQLHLDASLH AASPPPSYHR YAHAYYAPPP SLFPGGYGHS QSKELQDAEL 240
RRRHYLALGA DLSLDKPPAA GGGGGGQDSA AATEKPLRRF FDEWPREGGD ARPWTVGAED 300
ATQLSISIPA ASPADLAAAR YHNGE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT040071 | 1e-164 | BT040071.1 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds. |
| GenBank | BT041540 | 1e-164 | BT041540.1 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds. |
| GenBank | BT055390 | 1e-164 | BT055390.1 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds. |
| GenBank | EF515850 | 1e-164 | EF515850.1 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds. |
| GenBank | JX469985 | 1e-164 | JX469985.1 Zea mays subsp. mays clone UT3345 GRF-type transcription factor mRNA, partial cds. |
