PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02856.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 697aa    MW: 75127.7 Da    PI: 5.6146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02856.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.4e-201772156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    r++ +++t++q+++Le++F+++++p++++r+ L ++l+L+ +q+k+WFqNrR+++k
  Pahal.D02856.1 17 RKQYHRHTPHQIQQLEAMFKECPHPDENQRAALGRELDLEPQQIKFWFQNRRTQMK 72
                    789999***********************************************998 PP
2START151.48e-482044282206
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     la +a++el+++a+a+ ++Wvk +     + +n   + + f+  ++       s+e +r+sg+v+m ++ lv  ++d++ +W+e ++    ka t
  Pahal.D02856.1 204 LAARAMDELIRLAQAGRQLWVKGVpgdalDTLNVAAYDSLFAAPGGafrppdISVEGSRDSGLVFMSAVALVDVFMDTN-KWTEFFPgivsKAHT 297
                     6789********************887776666666666665544489***99**************************.*************** PP

                     EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                      +v++sg     + l  m+ el + +p+vp R+f f+Ry++q ++g w+++dvS d  +++p      R+++lpSg+li ++sng+skvtwveh+
  Pahal.D02856.1 298 GDVLMSGlcgrsESLIMMYEELHVVTPVVPtREFSFLRYCKQIEQGLWAVADVSPDGLRDVP-YGTPPRSRRLPSGCLIADMSNGYSKVTWVEHM 391
                     **************************************************************.56667888************************ PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     + +  lp ++l+r lv sg+a+ga +w+a+lqr ce+
  Pahal.D02856.1 392 EIEQTLPiSALYRNLVLSGAAFGAHRWLAALQRACER 428
                     ***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-21376IPR009057Homeodomain-like
SuperFamilySSF466891.67E-19979IPR009057Homeodomain-like
PROSITE profilePS5007116.7631474IPR001356Homeobox domain
SMARTSM003891.1E-171678IPR001356Homeobox domain
CDDcd000866.66E-171775No hitNo description
PfamPF000461.1E-171772IPR001356Homeobox domain
PROSITE profilePS5084843.52194431IPR002913START domain
SuperFamilySSF559615.63E-29194430No hitNo description
CDDcd088752.71E-101198427No hitNo description
SMARTSM002342.9E-32203428IPR002913START domain
PfamPF018521.6E-40204428IPR002913START domain
SuperFamilySSF559615.36E-12459688No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MDSGDEPEGS NNNQHQRKQY HRHTPHQIQQ LEAMFKECPH PDENQRAALG RELDLEPQQI  60
KFWFQNRRTQ MKAQHERASN SFLRMENDKI RCENVTMREA LKNVICPNCV GQPVTDYFDA  120
QKLRMENTQL KEELDRMSSI TSKYLGRPFT QAPAVLPTSV PLLDLSVGGG LGGGPSLDLD  180
LLSGCSSGML PPVTEMERPM MIDLAARAMD ELIRLAQAGR QLWVKGVPGD ALDTLNVAAY  240
DSLFAAPGGA FRPPDISVEG SRDSGLVFMS AVALVDVFMD TNKWTEFFPG IVSKAHTGDV  300
LMSGLCGRSE SLIMMYEELH VVTPVVPTRE FSFLRYCKQI EQGLWAVADV SPDGLRDVPY  360
GTPPRSRRLP SGCLIADMSN GYSKVTWVEH MEIEQTLPIS ALYRNLVLSG AAFGAHRWLA  420
ALQRACERVA SLAMLGAPHH DLAGAGVTPE GQRSTMKLSQ QMVGLFCASL SSSPLQRWVL  480
LPGTTDVSIR VAAQRSAEPG QPNGVVLTAA TSIWLPVPAN HAFAFLRDES ARSQWDILAH  540
ANQVQEVLRI PNGSNPDNCV SVLRGTMTDA NQDGMLILQE SCTDASGSSL VVYSPIDLLT  600
ANVVMSGEDA SGIPLLPSGF AILPDARPGS GAGATSSSSV GPLGKISPGC VVAVAFQILV  660
SSLPSSRVDA ESMATVTGLI GTTVQQIKAA LNCAGH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813558.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2S3HL600.0A0A2S3HL60_9POAL; Uncharacterized protein
STRINGPavir.Db02040.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11