PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D02830.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 23587.1 Da PI: 4.5043 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 24 | 72 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+e+r p g+++r++lg++ tae Aa+a++aa ++l+g Pahal.D02830.2 24 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 72 9****998.*******9998...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 23 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-28 | 23 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.666 | 23 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-16 | 23 | 83 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-10 | 24 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-13 | 24 | 82 | No hit | No description |
PRINTS | PR00367 | 2.9E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVKAAAASND TASAAAKHGA KRTYKGVRMR SWGSWVSEVR APGQKTRIWL GSHSTAEAAA 60 RAYDAALLCL KGSAAAADLN FPLRLPFDLP PAAMSPKAIQ RVAAAAAAAA GGAGFAACAA 120 DNADSACSGT TAATPAWSSG SPSDDASAVS SPESTLSSES ELPAHHYGDA DADYYSSLAD 180 IDAFFQSPKC MEYAMMDPCS AFFAPAPAAA DDACWEEEGD IALWSFSALG C* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004687 | 3e-76 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. | |||
GenBank | AP014962 | 3e-76 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 3e-76 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810729.1 | 1e-162 | ethylene-responsive transcription factor ERF014-like | ||||
Refseq | XP_025810730.1 | 1e-162 | ethylene-responsive transcription factor ERF014-like | ||||
Refseq | XP_025810731.1 | 1e-162 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A2S3HKS7 | 1e-161 | A0A2S3HKS7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E1G3 | 1e-161 | A0A2T7E1G3_9POAL; Uncharacterized protein | ||||
STRING | Si007977m | 1e-110 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 4e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D02830.2 |