PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.D02811.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 419aa MW: 45018 Da PI: 8.5817

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02811.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.6e-11	202	243	3	44
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 +++++rr+++NReAAr+sR RKka+i eLe +L + ++ Pahal.D02811.1 202 SWQVQRRLAQNREAARKSRMRKKAYIVELESSRTKLAQLEQE 243 6899*************************9765555554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-4	200	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	202	246	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-8	203	244	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-7	205	247	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-8	206	248	No hit	No description
PROSITE pattern	PS00036	0	207	222	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-28	286	361	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MATRGVPRAR HQQQRLVRLR RERLSLLARR VRLANALLPC PRLVCRAEQG AGGYHHYHGV 60 GDGALLPELP RSPNPSSKSS SNLTAATFVQ PLAVAHGGVA PSFGMAPPAV AAAADDARFC 120 LPWAAAGAAP FENWGDSGIV VTSPLTETTC TDADDASGDR QHAQGGAITQ SVAAYMDSCA 180 ASKEGPCRDQ KCLWSVLSVV GSWQVQRRLA QNREAARKSR MRKKAYIVEL ESSRTKLAQL 240 EQELQRARQQ GMFIASGRTG DHGGSTGGAS AFDLEYARWL DEHQRHMTDL RVALGAQIGD 300 DDLRVLVDGA MLHYEQMFRL KGAATRSDVF HVLSGMWMSP AERFFMWLGG FRSSELLKVL 360 ARHVEPLTEQ QLVGICSLQQ SSQQAEDALS QGMEALQQAL ADTLAAAAAG AGAGAPRA*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MATRGVPRAR HQQQRLVRLR RERLSLLARR VRLANALLPC PRLVCRAEQG AGGYHHYHGV  60
GDGALLPELP RSPNPSSKSS SNLTAATFVQ PLAVAHGGVA PSFGMAPPAV AAAADDARFC  120
LPWAAAGAAP FENWGDSGIV VTSPLTETTC TDADDASGDR QHAQGGAITQ SVAAYMDSCA  180
ASKEGPCRDQ KCLWSVLSVV GSWQVQRRLA QNREAARKSR MRKKAYIVEL ESSRTKLAQL  240
EQELQRARQQ GMFIASGRTG DHGGSTGGAS AFDLEYARWL DEHQRHMTDL RVALGAQIGD  300
DDLRVLVDGA MLHYEQMFRL KGAATRSDVF HVLSGMWMSP AERFFMWLGG FRSSELLKVL  360
ARHVEPLTEQ QLVGICSLQQ SSQQAEDALS QGMEALQQAL ADTLAAAAAG AGAGAPRA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	22	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085145	0.0	BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
GenBank	KJ727560	0.0	KJ727560.1 Zea mays clone pUT5420 bZIP transcription factor (bZIP57) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660509.2	0.0	transcription factor TGAL3
Swissprot	Q5Z6N9	1e-123	TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBL	A0A2T8JE64	0.0	A0A2T8JE64_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PD60	0.0	A0A3L6PD60_PANMI; Transcription factor HBP-1b(C38)-like
STRING	Pavir.J20659.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.3	1e-75	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Pahal.D02811.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]