PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D02567.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 463aa MW: 50662.8 Da PI: 6.6005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02567.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.7	5.7e-33	65	222	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kv+ + ++++ i+ +i++++P++Lp ++++ + +fF++ +k+y+tg+rk+r+ Pahal.D02567.1 65 LPAGVKFDPTDQELI-EHLQAKVRPGSaaapshplIDEFIPtIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqppaada 157 799**********.99*9999777775553333333776646******.455566799**************88*** PP NAM 78 .............tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Pahal.D02567.1 158 ssssapaaqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPEKTNWVMHQYHL 222 ***99998755789********.9999******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-36	59	241	IPR003441	NAC domain
PROSITE profile	PS51005	30.129	65	241	IPR003441	NAC domain
Pfam	PF02365	3.0E-15	66	222	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MGSWQQGELQ ATAMDGAAAA GAGSGGGDHR LIGLRIEEYG KYISDSTCCP QCGHKIDRKL 60 DWVGLPAGVK FDPTDQELIE HLQAKVRPGS AAAPSHPLID EFIPTIEGED GICYTHPEKL 120 PGLTKDGLSR HFFHRPSKAY TTGTRKRRKI QPPAADASSS SAPAAQQQQQ RSETRWHKTG 180 KTRPVVVAGR QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGENEEERE GELVVSKIFY 240 QTQPRQCGAA AEPAAPASSD TVDGAADPAA EAVVAPPDVG DGGVFHGATG IDEFNFAQFR 300 SSFEEVGVGT SVQVPARADE EVHTGHLHLH QEHDLQQHRY TNHQEQQRMA AAAAAFQIST 360 PAEPITTMIS SSPMVHHGSV ILQQQEPYDH SASYRHHQQE DEQPHQSRNF DGRSTSGLEE 420 VIMGCTSRRS RRGEASGSGG NKESSDWQYP SFWPSDSQDH HG*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MGSWQQGELQ ATAMDGAAAA GAGSGGGDHR LIGLRIEEYG KYISDSTCCP QCGHKIDRKL  60
DWVGLPAGVK FDPTDQELIE HLQAKVRPGS AAAPSHPLID EFIPTIEGED GICYTHPEKL  120
PGLTKDGLSR HFFHRPSKAY TTGTRKRRKI QPPAADASSS SAPAAQQQQQ RSETRWHKTG  180
KTRPVVVAGR QRGCKKILVL YTNFGKHRRP EKTNWVMHQY HLGENEEERE GELVVSKIFY  240
QTQPRQCGAA AEPAAPASSD TVDGAADPAA EAVVAPPDVG DGGVFHGATG IDEFNFAQFR  300
SSFEEVGVGT SVQVPARADE EVHTGHLHLH QEHDLQQHRY TNHQEQQRMA AAAAAFQIST  360
PAEPITTMIS SSPMVHHGSV ILQQQEPYDH SASYRHHQQE DEQPHQSRNF DGRSTSGLEE  420
VIMGCTSRRS RRGEASGSGG NKESSDWQYP SFWPSDSQDH HG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969775	0.0	EU969775.1 Zea mays clone 335447 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812519.1	0.0	NAC domain-containing protein 75-like
Swissprot	Q9M0F8	1e-107	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2S3HIL9	0.0	A0A2S3HIL9_9POAL; Uncharacterized protein
STRING	Si006435m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	6e-98	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Pahal.D02567.1

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]