PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.D02446.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 336aa MW: 37419.3 Da PI: 9.3488

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02446.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	50	92	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka++++Le +L + ++L+ Pahal.D02446.1 50 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 92 5899*************************86666666555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-8	47	110	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.2E-8	47	94	No hit	No description
PROSITE profile	PS50217	9.289	49	93	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	51	92	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.88E-7	51	94	No hit	No description
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-32	133	208	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MADASSRTDT STVVDTDDKN QRLENGQSGA IVMASNSSDR SDRSDKPMDQ KVLRRLAQNR 60 EAARKSRLRK KAYVQQLESS KLKLASLEQE LQKARQQGIF ISSSGDQTHA MSGNGAMTFD 120 LEYSRWQEEQ NKQINELRTA VNAHASDSDL RLIVDGIMAH YDEIFRLKGI AAKADVFHIL 180 SGMWKTPAER CFLWLGGFRS SELLKLLVNQ LEPLTEQQLM GLSNLQQSSQ QAEDALSQGM 240 EALQQSLAET LAGSLGPSGS SGNVANYMGQ MAMAMGKLGT LENFLRQADN LRQQTLHQMQ 300 RILTIRQAAR ALLSIHDYFS RLRALSSLWL ARPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727805	0.0	KJ727805.1 Zea mays clone pUT5757 bZIP transcription factor (bZIP52) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791493.1	0.0	transcription factor TGA2.2
Refseq	XP_025791494.1	0.0	transcription factor TGA2.2
Refseq	XP_025791495.1	0.0	transcription factor TGA2.2
Swissprot	Q6IVC3	0.0	TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBL	A0A2S3IR60	0.0	A0A2S3IR60_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CDK9	0.0	A0A2T7CDK9_9POAL; Uncharacterized protein
STRING	Si036527m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-143	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.D02446.1

Publications ? help Back to Top
Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20 [PMID:15986920] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]