 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.D02400.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
WOX |
| Protein Properties |
Length: 315aa MW: 32297.9 Da PI: 8.0374 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.D02400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 47.7 | 2.7e-15 | 38 | 98 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++
Pahal.D02400.1 38 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 98
89*****************99*************************************997 PP
|
| 2 | Wus_type_Homeobox | 106.9 | 1.2e-34 | 37 | 100 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
Pahal.D02400.1 37 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 100
589***********************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MEGSSNSPDR QSSGGSPEER GSGSGSGSGG RGTGEPVRSR WTPKPEQILI LESIFNSGMV 60
NPPKDETVRI RKLLERFGAV GDANVFYWFQ NRRSRSRRRQ RQMQAAAAAA AAAAASAAQS 120
SPVASPTVGL PSGAVRYPLA MGGSASVCQY EQQASSSSSS GSTGGSSLGL FALGPGVPGT 180
GAGYFQASCG ASSPLAPGLM GDVDSGGGSD DLFAISRQMG FAESPVASSS VAPSTTAGHQ 240
QQYYSCQSPA ATITVFINGV PMEVPRGPID LRAMFGQDVM LVHSTGALLP VNDYGILTQN 300
LQMGESYFLV ARPT*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728413 | 0.0 | KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds. |
