PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02393.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 354aa    MW: 39133.1 Da    PI: 6.6135
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02393.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87e-56201471129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee++++yL++k+ +++++   vi evd++k+ePw+Lp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+++ 
  Pahal.D02393.1  20 LPPGFRFHPTDEEIITHYLTHKALDHRFTS-GVIGEVDLNKCEPWHLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDKEIFRG 113
                     79*************************999.99***************99999****************************************** PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g lvg+kktLvfy+grap+gekt Wvmhe+rle
  Pahal.D02393.1 114 RGILVGMKKTLVFYRGRAPRGEKTGWVMHEFRLE 147
                     *******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-6315170IPR003441NAC domain
PROSITE profilePS5100558.6320170IPR003441NAC domain
PfamPF023652.2E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSEVSVINQA EVEDAGQLDL PPGFRFHPTD EEIITHYLTH KALDHRFTSG VIGEVDLNKC  60
EPWHLPGRAK MGEKEWYFFC HKDRKYPTGT RTNRATETGY WKATGKDKEI FRGRGILVGM  120
KKTLVFYRGR APRGEKTGWV MHEFRLEGKL PHPLPRSAKD EWAVCKVFNK ELAARAEPMA  180
AAGAELERIG SLGFISELLD NAELPPLMDP SFGGEVDEVV DFKGASTSAH PAAPGASYLP  240
VKMEQQAPLQ YHNHHHQQQA PPMFYSSQYF SLPAVNSGDL TPAIRRYCKA EQVASGQTTS  300
VLSPSRETGL STDPNAGGGC AEISSAATPS SASHQFLHEL DDPLLHVADF WKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-541117511173NAC domain-containing protein 19
3swm_B4e-541117511173NAC domain-containing protein 19
3swm_C4e-541117511173NAC domain-containing protein 19
3swm_D4e-541117511173NAC domain-containing protein 19
3swp_A4e-541117511173NAC domain-containing protein 19
3swp_B4e-541117511173NAC domain-containing protein 19
3swp_C4e-541117511173NAC domain-containing protein 19
3swp_D4e-541117511173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563950.0EU956395.1 Zea mays clone 1562064 GRAB2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797166.10.0NAC domain-containing protein 87-like
SwissprotQ9FK443e-98NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2S3IQY50.0A0A2S3IQY5_9POAL; Uncharacterized protein
STRINGPavir.Ib01526.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-97Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]