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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.D02101.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C3H |
| Protein Properties |
Length: 368aa MW: 41356.8 Da PI: 7.9642 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.D02101.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 18.2 | 4.5e-06 | 5 | 27 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++lC+ff+ G C G+ C F+H+
Pahal.D02101.1 5 RVLCKFFMH-GACLKGEYCEFSHD 27
78***8888.*************5 PP
|
| 2 | zf-CCCH | 28.4 | 2.8e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C f+++ G C+yG+rC++ H+
Pahal.D02101.1 35 VCTFYQK-GACSYGSRCRYDHV 55
5******.*************7 PP
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| 3 | zf-CCCH | 19.3 | 2e-06 | 150 | 171 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C+ fa+ G C+yG+ C+ +Hg
Pahal.D02101.1 150 PICS-FAAAGNCPYGEGCPQMHG 171
6788.*****************9 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.77 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.97E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.9E-5 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.277 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.4E-4 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.36E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.5E-7 | 35 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.343 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.016 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 7.78E-12 | 204 | 279 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 3.0E-10 | 208 | 274 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.00146 | 214 | 274 | No hit | No description |
| PROSITE profile | PS50089 | 12.238 | 215 | 273 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 4.0E-7 | 215 | 272 | IPR018957 | Zinc finger, C3HC4 RING-type |
| SMART | SM00184 | 3.9E-7 | 215 | 272 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 239 | 248 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 13.676 | 302 | 331 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.011 | 302 | 330 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MSTNRVLCKF FMHGACLKGE YCEFSHDWKD QANNVCTFYQ KGACSYGSRC RYDHVKVSRN 60
PTVLLPSPSS STARLTSTSL QLSSSGHPPR TGHPTDSSNQ RNQISVDVLA HSASKPAWRN 120
DFQHVSEDGI DWSSNQTLQN QTSLKPADLP ICSFAAAGNC PYGEGCPQMH GDLCSTCGKM 180
CLHPYRPDER EEHIKLCEKN HKRLEALKRS QEIECSVCLD RVLSKPTAAE RKFGLLSECD 240
HPFCVACIRN WRSNSPASGM DVNSALRACP ICRKLSYYVI PSVLWYFSKE EKEEIIESYK 300
SKLKSIDCKY FDFGTGSCPF GTSCFYRHAY RDGRLEEVVL RHLDADDGST VIAKNIRLSD 360
FLSRMHL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT065629 | 0.0 | BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Sahi VP, et al.
A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
Plant Signal Behav, 2012. 7(3): p. 375-81
[PMID:22499205] - Wadekar HB,Sahi VP,Morita EH,Abe S
MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
Planta, 2013. 237(4): p. 1083-95
[PMID:23262670]
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