PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01699.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 482aa    MW: 53944.1 Da    PI: 10.4249
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01699.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57329.52.1e-0948138297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvs.ksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     lfqr ws  Dei +L ++   +  +g         +   + ++++ kv   +++ eK r+LK++++++  k         + eh++  + ls+ +
  Pahal.D01699.2  48 LFQRTWSPGDEIRILEAIAAHRRAHG-GDLPTAVVLLAALDGRLERKVVdARDVNEKQRSLKRRYHRHAMK-----AAPPADEHERRLYFLSRDV 136
                     79*******************99999.567788899999999*9999751689***************999.....4456679999********* PP

          DUF573  96 Wg 97 
                     W 
  Pahal.D01699.2 137 WA 138
                     95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-1449137IPR007592Protein of unknown function DUF573
PfamPF030179.7E-17402467IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAPSSPRRKE PSRPLAVLPS KSPEAPPEQK KRKTPPPHPP EAEPPKRLFQ RTWSPGDEIR  60
ILEAIAAHRR AHGGDLPTAV VLLAALDGRL ERKVVDARDV NEKQRSLKRR YHRHAMKAAP  120
PADEHERRLY FLSRDVWADD SRPKPPVAQA KSVSGGSPLK PRTTKATKDS KDATQAKSDG  180
EPTKDETKPR TLAEMREQYP YLVDEAMVLV DPPILQKLLP SIEDNEAQAL NKKIKKARKQ  240
LSKAITESAR MKNMETPTIF LYQSTKFQLE KPRLEKKDGE DICAQGRLAR VEHEVAELRQ  300
LFMSSRNQAI RCENAESGLR SVVAENQISC HMVQKKIKAP NGLPHGKNKE VTSKYKYDGV  360
LPSNVPRDNL KLQIKAPFNT LHGRTRKIDA ESQTQRNGAG KEVVLISLGR PRIPVGKAIL  420
EHSSQSTIVG GMALGTQCCK VFLREVLQRD APLFHKYGEM EKMSDALYCS IPWPSVLVNG  480
H*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825630.10.0uncharacterized protein LOC112901030 isoform X2
TrEMBLA0A2S3I4U70.0A0A2S3I4U7_9POAL; Uncharacterized protein
STRINGPavir.Ga02601.1.p1e-168(Panicum virgatum)