PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 21403.7 Da PI: 9.672 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.2 | 9.1e-18 | 21 | 63 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 rie+k +r+vt++kR+ gi+KK +EL LC+a vav ifs++ Pahal.D01684.1 21 RIEDKEKRHVTLCKRKGGIFKKCSELQLLCGAHVAVAIFSKKE 63 8***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.773 | 12 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.5E-20 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-19 | 13 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-13 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-18 | 21 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-13 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-13 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MTMVKPGKKT SKGRQKIEIR RIEDKEKRHV TLCKRKGGIF KKCSELQLLC GAHVAVAIFS 60 KKEEQPQPPT AGGRPSRGGN VFAMGTPSDD HVLRRFAPLP GDEVGLLLPA GADEEAEALV 120 KAEKDWMRAV GEKVQQAAEA AGKPFWWEAD VEALGEAELP EFARALQRIR EIVQREADKL 180 RTSAPPAVAP AAWHP* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813488.1 | 1e-139 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2S3HJ80 | 1e-138 | A0A2S3HJ80_9POAL; Uncharacterized protein | ||||
STRING | Si007275m | 2e-88 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-20 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01684.1 |