PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01488.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 298aa    MW: 33311.5 Da    PI: 11.7196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY711.7e-22152209359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++W KYGqK++kgs +pr+YYrC+   +C+++k+ er++ d +++++  +geH h+
  Pahal.D01488.1 152 DPWAWLKYGQKPIKGSLYPRGYYRCSNDkDCKARKQGERCRADHTTLIVSCTGEHSHP 209
                     89*************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-22145210IPR003657WRKY domain
SuperFamilySSF1182902.75E-20148210IPR003657WRKY domain
SMARTSM007747.7E-24150210IPR003657WRKY domain
PROSITE profilePS5081123.319152211IPR003657WRKY domain
PfamPF031061.8E-18152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEGDLRWCCG SRLAAATTGT STQRRILLLV AVPPLPQPQK DEQIDAVAWQ PLPAAPAVED  60
PCLQAFLAAP KPDTPQLASP RNEAPPQQPP AKPRASYRNG DGGGPTRSKR KYLLFSCEII  120
RGLWAHRACI RKKKNQVSKE VTRVPAGAPS PDPWAWLKYG QKPIKGSLYP RGYYRCSNDK  180
DCKARKQGER CRADHTTLIV SCTGEHSHPS RSTATPSPAL LATSRSRHRP PPPERNLRSR  240
GLSRRPAVNS RARRPLPPGC PPRLRCIIVR PRGWSTRKRS RRRPSLPFFC SKMRRWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-13139209677Disease resistance protein RRS1
5w3x_D2e-13139209677Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686093e-83BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700890.12e-56WRKY transcription factor 22
TrEMBLA0A3L6S0333e-71A0A3L6S033_PANMI; WRKY transcription factor 22-like
STRINGPavir.J27189.1.p1e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-23WRKY DNA-binding protein 27