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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01266.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 570aa MW: 64831.8 Da PI: 8.9486 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 9.2e-08 | 356 | 397 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e+ + v++ G+ Wk a +g +++ ++k+ w+ Pahal.D01266.1 356 KWTQEEYEIVRRFVEKNGTT-WKELATDLG--KSEIHVKDTWRRM 397 8*****************99.********8..9*******99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-7 | 280 | 352 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-4 | 280 | 351 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.413 | 283 | 349 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.0E-8 | 329 | 410 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.59 | 351 | 402 | IPR017930 | Myb domain |
SMART | SM00717 | 0.05 | 353 | 400 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-9 | 356 | 408 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.0E-9 | 357 | 415 | No hit | No description |
PROSITE profile | PS50090 | 8.258 | 399 | 467 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0022 | 403 | 469 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-8 | 409 | 452 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.75E-8 | 447 | 525 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-6 | 453 | 520 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.979 | 469 | 522 | IPR017877 | Myb-like domain |
SMART | SM00717 | 15 | 473 | 524 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MERGSAAEYS EVKAVIGSNE EKKGQRSKKD KGQRKRKKDK AKGHGGDGDR SIESNDKNHS 60 VEMEHAEVSA KMAEKLCSEH AEVIMSKRDA KKDRKKKKRN KEVDTISQKQ IPDANDGSVG 120 SEYVEMNKGE GEHDSTSKKG KRKHRDGETS SNGSCDQIVS GGDKKRKRKE PSVTLEEGND 180 VDVSKMGQNT EGKKKRRKER DNIAVDLSQN TPAGDGKNCN EEKKTSKDDN DGGKSRKVNM 240 ARRKDKGKRV SFTDDVEVFN IDGGGADEEG DGSGDSGLVH GKRFTPEEDA KLMEAIEKYA 300 EMKQLGEKGL EMIRASMKHP ELRGCWAEIA TSLPHRPQMA VYKRARILLY RSAERKWTQE 360 EYEIVRRFVE KNGTTWKELA TDLGKSEIHV KDTWRRMKPK NLKKGSWTQD EYQNLFDLVN 420 LDLRVKAHQK IAPSHRQLRD NISWEAISEK LTTRSNKDCC LKWYQQLASP LVKEGIWADT 480 DDYLLMEALQ KVDAVCVEDV DWERLLDHRS GELCRQRWNQ MVRMIGGHRE KPFIEQVEVL 540 ARRYCPEMLD YRKAESADLS PDELTGGTD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 35 | DKGQRKR |
2 | 33 | 37 | RKRKK |
3 | 33 | 38 | RKRKKD |
4 | 33 | 39 | RKRKKDK |
5 | 90 | 98 | KKDRKKKKR |
6 | 93 | 98 | RKKKKR |
7 | 163 | 168 | KKRKRK |
8 | 192 | 196 | KKKRR |
9 | 192 | 197 | KKKRRK |
10 | 193 | 197 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810828.1 | 0.0 | uncharacterized protein LOC112888736 isoform X1 | ||||
Refseq | XP_025810829.1 | 0.0 | uncharacterized protein LOC112888736 isoform X1 | ||||
Refseq | XP_025810833.1 | 0.0 | uncharacterized protein LOC112888736 isoform X1 | ||||
Refseq | XP_025810834.1 | 0.0 | uncharacterized protein LOC112888736 isoform X1 | ||||
TrEMBL | A0A2T8JEY1 | 0.0 | A0A2T8JEY1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db02194.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5405 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 2e-95 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01266.1 |