PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 106aa MW: 11967.7 Da PI: 12.6316 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.3 | 2.1e-09 | 24 | 57 | 2 | 42 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42 +ykGVr+++ + +W+AeI + r++lg+ +ae A Pahal.D01194.1 24 RYKGVRRRS-WSKWAAEIVK------SVRIWLGTLSSAEAA 57 6*****887.*******755......7**********6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.839 | 24 | 60 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-11 | 24 | 60 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-4 | 24 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-9 | 24 | 62 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-6 | 24 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-7 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-7 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MKSARNQQHQ QAAPMPNSRR KTARYKGVRR RSWSKWAAEI VKSVRIWLGT LSSAEAATRT 60 RLRRPAAGQQ RGRAACALPR RQSRPSPRAA RWYGERRDLT GGSLE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 30 | RRKTARYKGVRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797880.1 | 5e-15 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A3L6SDZ0 | 4e-14 | A0A3L6SDZ0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Bb03080.1.p | 4e-18 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP56834 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.2 | 1e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01194.1 |