PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01166.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 249aa    MW: 26715 Da    PI: 8.7993
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01166.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB152.86.4e-4842135295
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     reqd+++P+anvsrim+++lP +akis+dake++q+cvsefisfvt+ea+++c+ e+rkt++++dl+wa+  lGf+dy+ pl+++l++ re+eg
  Pahal.D01166.1  42 REQDQLMPVANVSRIMRHALPPHAKISDDAKEMIQDCVSEFISFVTGEANERCHTEHRKTVTAEDLVWAMNRLGFDDYIRPLNAFLQRMREIEG 135
                     89******************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-4339138IPR009072Histone-fold
SuperFamilySSF471138.23E-3444141IPR009072Histone-fold
PfamPF008082.5E-2448111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-137593No hitNo description
PROSITE patternPS0068507894IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-1394112No hitNo description
PRINTSPR006151.8E-13113131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSMDPQDPKP RASCTSPTER AAIAKEAMAT EPLVPGTEPV IREQDQLMPV ANVSRIMRHA  60
LPPHAKISDD AKEMIQDCVS EFISFVTGEA NERCHTEHRK TVTAEDLVWA MNRLGFDDYI  120
RPLNAFLQRM REIEGGGAGG RGSGRGSRRG TSLAALHGAH TMRPAVSYPA APQGYAVQPV  180
PRPVPVPATS AASHFGSRYQ MPGGQRSMVP YYGGAAFRAG GSHGGFYADE ASSSNEAPPT  240
RRAGSRHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A9e-4736132197NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609747e-99BT060974.1 Zea mays full-length cDNA clone ZM_BFb0079C17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813135.11e-162nuclear transcription factor Y subunit B-3-like
TrEMBLA0A2S3HJP80.0A0A2S3HJP8_9POAL; Uncharacterized protein
STRINGPavir.Db01322.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.12e-48NF-YB family protein