PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01166.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 249aa MW: 26715 Da PI: 8.7993

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01166.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	152.8	6.4e-48	42	135	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqd+++P+anvsrim+++lP +akis+dake++q+cvsefisfvt+ea+++c+ e+rkt++++dl+wa+ lGf+dy+ pl+++l++ re+eg Pahal.D01166.1 42 REQDQLMPVANVSRIMRHALPPHAKISDDAKEMIQDCVSEFISFVTGEANERCHTEHRKTVTAEDLVWAMNRLGFDDYIRPLNAFLQRMREIEG 135 89******************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.1E-43	39	138	IPR009072	Histone-fold
SuperFamily	SSF47113	8.23E-34	44	141	IPR009072	Histone-fold
Pfam	PF00808	2.5E-24	48	111	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.8E-13	75	93	No hit	No description
PROSITE pattern	PS00685	0	78	94	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.8E-13	94	112	No hit	No description
PRINTS	PR00615	1.8E-13	113	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MSMDPQDPKP RASCTSPTER AAIAKEAMAT EPLVPGTEPV IREQDQLMPV ANVSRIMRHA 60 LPPHAKISDD AKEMIQDCVS EFISFVTGEA NERCHTEHRK TVTAEDLVWA MNRLGFDDYI 120 RPLNAFLQRM REIEGGGAGG RGSGRGSRRG TSLAALHGAH TMRPAVSYPA APQGYAVQPV 180 PRPVPVPATS AASHFGSRYQ MPGGQRSMVP YYGGAAFRAG GSHGGFYADE ASSSNEAPPT 240 RRAGSRHY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-47	36	132	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060974	7e-99	BT060974.1 Zea mays full-length cDNA clone ZM_BFb0079C17 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813135.1	1e-162	nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A2S3HJP8	0.0	A0A2S3HJP8_9POAL; Uncharacterized protein
STRING	Pavir.Db01322.1.p	1e-124	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-48	NF-YB family protein

Link Out ? help Back to Top
Phytozome	Pahal.D01166.1