PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.D01165.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 221aa MW: 24505.2 Da PI: 9.3988

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01165.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	84.9	9.3e-27	67	143	21	97
NF-YB 21 lPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 P +ki dake v++c +ef + + + a + c+r+kr t++gddl+ al++lGf+dyv pl +yl++yre+eg++ Pahal.D01165.1 67 SPPSSKIKGDAKEAVDNCLVEFCAVLIAAALEECRRDKRTTVTGDDLILALSNLGFDDYVRPLALYLRRYREIEGNR 143 58899*********************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	8.1E-8	67	117	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.72E-20	68	147	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-21	68	150	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MPSSLPVDLR CAPLPSAPAV GVLPAAHRGV YPRCYQSPRW CKRHRSSTRR AKDSKSHRSA 60 HHEPRLSPPS SKIKGDAKEA VDNCLVEFCA VLIAAALEEC RRDKRTTVTG DDLILALSNL 120 GFDDYVRPLA LYLRRYREIE GNRPRARHSS MAALDPTAPA VEVEALQPPS PDPTLQLEPQ 180 SVRDVTELGL HACTLCGVRL QRPLQEPCRR HLVLMTTRNK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-20	65	138	24	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813092.1	1e-66	nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A2T7DZH2	1e-101	A0A2T7DZH2_9POAL; Uncharacterized protein
STRING	Pavir.Da01559.1.p	3e-67	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-25	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Pahal.D01165.1