![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.D01165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 221aa MW: 24505.2 Da PI: 9.3988 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 84.9 | 9.3e-27 | 67 | 143 | 21 | 97 |
NF-YB 21 lPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 P +ki dake v++c +ef + + + a + c+r+kr t++gddl+ al++lGf+dyv pl +yl++yre+eg++ Pahal.D01165.1 67 SPPSSKIKGDAKEAVDNCLVEFCAVLIAAALEECRRDKRTTVTGDDLILALSNLGFDDYVRPLALYLRRYREIEGNR 143 58899*********************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 8.1E-8 | 67 | 117 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.72E-20 | 68 | 147 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.0E-21 | 68 | 150 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MPSSLPVDLR CAPLPSAPAV GVLPAAHRGV YPRCYQSPRW CKRHRSSTRR AKDSKSHRSA 60 HHEPRLSPPS SKIKGDAKEA VDNCLVEFCA VLIAAALEEC RRDKRTTVTG DDLILALSNL 120 GFDDYVRPLA LYLRRYREIE GNRPRARHSS MAALDPTAPA VEVEALQPPS PDPTLQLEPQ 180 SVRDVTELGL HACTLCGVRL QRPLQEPCRR HLVLMTTRNK * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-20 | 65 | 138 | 24 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813092.1 | 1e-66 | nuclear transcription factor Y subunit B-4-like | ||||
TrEMBL | A0A2T7DZH2 | 1e-101 | A0A2T7DZH2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da01559.1.p | 3e-67 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-25 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.D01165.1 |