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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YB | ||||||||
Protein Properties | Length: 191aa MW: 20610 Da PI: 4.7916 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 104.2 | 9.1e-33 | 21 | 111 | 7 | 97 |
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +P a v+rim++ P n+ki+ dake v++c +ef + + a + c+r+kr t++gddl++a+ +lGf+dyv pl +yl++yre+eg++ Pahal.D01163.1 21 RIPRATVARIMRHGSPPNSKITGDAKEAVDNCLVEFCAVFIAAAVEECRRDKRTTVTGDDLIFAMRNLGFDDYVRPLALYLRRYREIEGNR 111 6899**********************************99999*********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-30 | 12 | 119 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.78E-27 | 18 | 115 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.0E-15 | 21 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MDKNQANNHQ DGTDQAPEEL RIPRATVARI MRHGSPPNSK ITGDAKEAVD NCLVEFCAVF 60 IAAAVEECRR DKRTTVTGDD LIFAMRNLGF DDYVRPLALY LRRYREIEGN RPRARHSSMA 120 ALDPTAPAVG AEVQQQQPPP GLNLQLGPPP VRDVTELGPH ADVYAVWRAA AAAAAGTSQA 180 PGGADDEDEE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 4e-26 | 18 | 106 | 5 | 93 | NF-YB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813092.1 | 1e-131 | nuclear transcription factor Y subunit B-4-like | ||||
TrEMBL | A0A3L6PHB2 | 1e-125 | A0A3L6PHB2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Da01559.1.p | 1e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 8e-34 | nuclear factor Y, subunit B8 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01163.1 |