PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01151.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 291aa MW: 29623.9 Da PI: 7.3634

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01151.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.7	2.3e-37	33	90	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++cprC+s ntkfCyynny+l+qPr+fCkaCrryWtkGG lrnvPvGgg+rk+k Pahal.D01151.1 33 ARKVRCPRCESPNTKFCYYNNYNLAQPRHFCKACRRYWTKGGHLRNVPVGGGCRKHKP 90 57899**************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	30	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-32	35	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MQELKPVPGM AGRLFGAGAA ANGGSSEAAQ QEARKVRCPR CESPNTKFCY YNNYNLAQPR 60 HFCKACRRYW TKGGHLRNVP VGGGCRKHKP KRPTAAAVDG SDRNGKIRHS GCAGASSSPA 120 ADGDAPVSSV FSVVTEPSGI SSGPSRSVAE AGAGTASCAA GDMRTLLVPP PAPVFSDQAA 180 VFASLFATPR PLPAFSSSSA HSMAEERVAT SLAEQQSLDS DAAAAGTAPF SGSARPDGAL 240 AAGASDWPTA ASGAGVFELA GGIAGDASLP EYWNPESWTD PDPDPTIYLP *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374973	4e-67	AK374973.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081L07.
GenBank	AM084352	4e-67	AM084352.1 Hordeum vulgare subsp. vulgare dof4 gene for dof zinc finger protein 4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812528.1	0.0	dof zinc finger protein 4-like
TrEMBL	A0A2S3HJX7	0.0	A0A2S3HJX7_9POAL; Uncharacterized protein
STRING	Pavir.Da01417.1.p	1e-127	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-32	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pahal.D01151.1