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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 204aa MW: 21037.9 Da PI: 4.7868 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.2 | 1.5e-10 | 36 | 98 | 4 | 66 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk..kvkaeekewyfFskrdk 66 +rF+Ptdeel+++yL++k ++ ++l +++ +ePwdL p+ +++ yfF++r+ Pahal.D01084.1 36 VLRFRPTDEELLTHYLTPKEADAGFTL-A--VVCEVEWSEPWDLlPAggGSREGGGGGYFFCRRSG 98 58*********************9888.4..45577789*****54423333344467****9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-12 | 29 | 117 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.144 | 33 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-9 | 36 | 108 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
PWSPPTTTAQ RDLAGGSDGG CVQAHERVRR ILLGPVLRFR PTDEELLTHY LTPKEADAGF 60 TLAVVCEVEW SEPWDLLPAG GGSREGGGGG YFFCRRSGGG RGTAVRAGRE KEVRDGDVCC 120 GDGGGEVEHV GHGGGDLVDS EEEGRAAEAR GWVGGEGERG EQRVDSGSAA AGTEGSEGKG 180 SVANSARMLW RRGEGSGGGG WRG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-09 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01084.1 |