PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D00864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARR-B | ||||||||
Protein Properties | Length: 754aa MW: 81469.5 Da PI: 6.4021 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.4 | 1.2e-26 | 264 | 317 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r++W eLH++Fveav+q+ G+++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+ Pahal.D00864.1 264 RQRVQWPGELHRKFVEAVNQI-GIDRAVPKKILEVMNVDSLTRENVASHLQKYRI 317 58*******************.********************************6 PP | |||||||
2 | Response_reg | 76.3 | 1.1e-25 | 83 | 192 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl vdD+++ +++l++ l++ +y +v++++d++ al++l+e++ ++l++ D+ mp++dG++ll+ i e ++p+i+++a++e e++ + ++ Pahal.D00864.1 83 VLAVDDDRVSLMILEKQLKHCNY-NVTTVTDAKTALDMLRERKdvdqFELVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANDETETVMKGIN 175 799********************.***************99988999**********************6644.8******************** PP TTESEEEESS--HHHHH CS Response_reg 92 aGakdflsKpfdpeelv 108 Ga d+l+Kp+ e+l+ Pahal.D00864.1 176 HGACDYLVKPVRLEQLR 192 **************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-39 | 80 | 228 | No hit | No description |
SuperFamily | SSF52172 | 4.98E-34 | 80 | 202 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.1E-29 | 81 | 195 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.895 | 82 | 199 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-22 | 83 | 192 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.95E-28 | 84 | 192 | No hit | No description |
PROSITE profile | PS51294 | 11.484 | 261 | 320 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-18 | 261 | 321 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-27 | 262 | 321 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 265 | 317 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 754 aa Download sequence Send to blast |
MSGEFHTRMN TFHLCSLRYS DPRSSPLPTP LAINPPSPSL RCASPRIRLA LSSAFLPAAP 60 RGSCREAIAA EMDAGKFPAG MRVLAVDDDR VSLMILEKQL KHCNYNVTTV TDAKTALDML 120 RERKDVDQFE LVISDVVMPD IDGFKLLELI GLEMDIPVIM LSANDETETV MKGINHGACD 180 YLVKPVRLEQ LRGIWTHVVR NSKSDPRNSI SDGNDDADQK LQSGDGDKGE KDGGNHTRKY 240 SKKKKKDIDG ADEDKENASS TQKRQRVQWP GELHRKFVEA VNQIGIDRAV PKKILEVMNV 300 DSLTRENVAS HLQKYRIFLR KLSEGKVKKS SPFADGPKAW RSDWVPAYST TNIAESSKHH 360 RELGKYQSAP SFVASPSSSN PFARMNSPPA FGARTFLPTQ SVQLVSSQRN ACIPPQDKEP 420 VGQGVNLSGA SQCFPSGPGS SFANIPNGVV FNTSKPLYLG ISGSSFANIT SDSPPLASSK 480 CCPSPRSCNS YASILCGKIL GASRGIPFED IADDEILAPS IHLPMQSPEL VNQPPDQIQS 540 SFAGLFNQVA REAHQFAGPC NSWKAAVPSR FPDLSHNVGM SKGPSQGNIV KINQLSRLAA 600 SSGQIPILGN LYQNQLAGII GKTAPALSFS EQVEPFNFGS NTHYTTMSIG NPDLGSSSST 660 RPSLPNLQID NSVIPTQILN GEDASGNLPE GGTNNQQAVG DQVINSNEFL VGTNEVQNGA 720 NGGLNDFFAD MVDEQDFVNN GDAFLGGDWD FAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-22 | 260 | 323 | 1 | 64 | ARR10-B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812920.1 | 0.0 | two-component response regulator ORR25-like isoform X1 | ||||
TrEMBL | A0A2S3HI73 | 0.0 | A0A2S3HI73_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db00757.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13504 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-79 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D00864.1 |