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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.D00714.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
WRKY |
| Protein Properties |
Length: 331aa MW: 35844.5 Da PI: 9.7222 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.D00714.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 94.8 | 5.9e-30 | 180 | 239 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsaed+++++ tYegeHnh
Pahal.D00714.1 180 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDKTILVATYEGEHNHG 239
58***************************99****************************5 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MDPWIGGQPS LSLDLNVGLP TAHPVAPAAT KVLVEENFLA VRKDREQVEA LEAELRRVGE 60
ENRRLSEMLR AVVAKYTELQ GQVNDMVAAG NNRQSSTSEG GSAASPSRKR IRSDSLDTAG 120
GGHHRKPSPP FAIPVHDQME CTSAAAAVFH EPGRRIREEC KPKVSRRYVH ADPADLSLVV 180
KDGYQWRKYG QKVTKDNPCP RAYFRCSFAP ACPVKKKVQR SAEDKTILVA TYEGEHNHGQ 240
PPQHDGKGAK PAAASEPVVR PAPLPLQQQK QPPQQQRHEA AAAAAAGPSE VVRKNLAEHM 300
AATLTRDPGF KAALASALSG RILELSPTRD *
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728369 | 1e-162 | KJ728369.1 Zea mays clone pUT6651 WRKY transcription factor (WRKY124) mRNA, partial cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Zhang Y,Wang L
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
BMC Evol. Biol., 2005. 5: p. 1
[PMID:15629062] - Wu KL,Guo ZJ,Wang HH,Li J
The WRKY family of transcription factors in rice and Arabidopsis and their origins.
DNA Res., 2005. 12(1): p. 9-26
[PMID:16106749] - Berri S, et al.
Characterization of WRKY co-regulatory networks in rice and Arabidopsis.
BMC Plant Biol., 2009. 9: p. 120
[PMID:19772648] - Delteil A, et al.
Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence.
Mol. Plant Pathol., 2012. 13(1): p. 72-82
[PMID:21726398] - Peng Y,Bartley LE,Canlas P,Ronald PC
OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity.
Rice (N Y), 2010. 3(1): p. 36-42
[PMID:21961049] - Chujo T, et al.
OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.
Plant Mol. Biol., 2013. 82(1-2): p. 23-37
[PMID:23462973] - Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H
Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly.
PLoS ONE, 2013. 8(4): p. e62460
[PMID:23638091]
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