PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00645.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 423aa    MW: 44701.2 Da    PI: 9.2963
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00645.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1314.2e-41181257177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Pahal.D00645.1 181 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAAGGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 257
                     6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-35174243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-39180260IPR004333Transcription factor, SBP-box
PfamPF031103.8E-31182255IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MMSGGRLNVA TSAPGDDFPF APMQQQQQPP PPPPPYVGFE HGVVGGGGQR GGGGMQHHLY  60
DGLDFAAVLQ FQEAAPHHQL LTLPSSLAPM APPPLPMPLQ MPMPMPGMPG DVYPALGMVK  120
REGVGADGAA SAAGGRIGLN LGRRTYFSPG DMLAVDRLLM RSRLGGVFGL GFGGAHHQPP  180
RCQAEGCKAD LSGAKHYHRR HKVCEYHAKA SVVAAGGKQQ RFCQQCSRFH VLTEFDEAKR  240
SCRKRLAEHN RRRRKPAAST ASSKDAASPP AKKPSGGSMT GSYTTDSKNL STAKSTMSSN  300
TGSVISCLDQ GNKQLARPTL TLGASPDKDH QHQQLSTMLQ VQAAAGGHHH HHHHHQEQHF  360
ITSLQVHNHN NGGGGGGNNI LSCSSVCSSA LPSANGEVSD QNTTTTNNGG GNMHNLFEVD  420
FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291822551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238255KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116160.0AJ011616.1 Zea mays mRNA for SBP-domain protein 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813364.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-112SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-112SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A2S3HHU40.0A0A2S3HHU4_9POAL; Uncharacterized protein
STRINGSi006559m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.19e-48squamosa promoter binding protein-like 8