PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.D00548.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 340aa MW: 36698.3 Da PI: 8.6483

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00548.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.2	7.9e-13	79	123	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky Pahal.D00548.1 79 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 123 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.44E-16	73	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.628	74	128	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.2E-18	77	126	IPR006447	Myb domain, plants
SMART	SM00717	2.7E-10	78	126	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.2E-6	78	119	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-10	79	123	IPR001005	SANT/Myb domain
CDD	cd00167	8.67E-8	81	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MVSMSTTPKP LDSAANAAAA VAGGGGDDGG GGGKQQQRRM RGAVVMAPPP MAVPTPAPAP 60 AAGEEVRKVR KPYTITKSRE SWTEPEHDKF LEALQLFDRD WKKIEAYVGS KTVIQIRSHA 120 QKYFLKVQKN GTGEHLPPPR PKRKAAHPYP QKASKNVSQA VLSQQLPQRE QGSVMSVDTS 180 TAVRNSNGNS AMPSWDNAPV QPFSASHVHG AVATNNCSSS IESPSGTWPT SEAVEQENVV 240 PPLRAMPDFA RVYSFLGSIF DPDTSGHLQR LKAMDPIDVE TVLLLMRNLS TNLTSPDFEE 300 HRKLLSSYSY GSDGHIKSEG MENLGSPQSC HLPFMVTSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068965	0.0	BT068965.1 Zea mays full-length cDNA clone ZM_BFb0062F11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812931.1	0.0	protein REVEILLE 6-like
Swissprot	Q8H0W3	3e-97	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A2S3HHA1	0.0	A0A2S3HHA1_9POAL; Uncharacterized protein
STRING	Pavir.Da00204.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	5e-85	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pahal.D00548.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]