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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D00398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 35249.4 Da PI: 11.8172 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 153 | 202 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g Pahal.D00398.1 153 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 202 59*******.7*********83...36*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-11 | 153 | 202 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 153 | 210 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.168 | 153 | 210 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-29 | 153 | 211 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.02E-14 | 153 | 210 | No hit | No description |
SMART | SM00380 | 3.1E-33 | 153 | 216 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-7 | 154 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-7 | 176 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MRMLIRRKAR TGALENNNSQ PAGARGGAAS PESTGARPGA TPKRARGAGR SATRRGRVVE 60 WWWWRRTRAR GRRNRSERAQ KRPKKPRRPG AGGAQREEPR AGVGKKINYW PNPSRAPGPL 120 TASPPPTCPP PSPSAMRRAK PPQPQPSPSP EIRYRGVRRR PSGRYAAEIR DPAKKTPIWL 180 GTFDSAEAAA RAYDAAARSL RGPTARTNFP SAAAPAPRHS RPPAASAAAQ AAAAAAAATS 240 SHSSTVESWS DGATRAAAAA LARSAAPTEE KDEEDCRSYC GSSSSVLCED AGGDDAAASR 300 APLPFDLNLP PPHDAATEAD QMGARYDTLL RL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 153 | 211 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953833 | 0.0 | EU953833.1 Zea mays clone 1447216 ethylene-responsive transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810343.1 | 1e-131 | ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A2T7DUU8 | 1e-85 | A0A2T7DUU8_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G175543_P01 | 5e-74 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 4e-09 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D00398.1 |