 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.D00115.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
SRS |
| Protein Properties |
Length: 323aa MW: 32453 Da PI: 9.1876 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.D00115.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 215.3 | 1.4e-66 | 94 | 254 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel..kskkqsalss 88
++sCqdCGn+akkdCah+RCRtCC+srgf+C thvkstWvpaakrrerqqqlaa+ + aa+++ a+aaskr+rel + + +++s
Pahal.D00115.1 94 AGTSCQDCGNNAKKDCAHMRCRTCCRSRGFSCPTHVKSTWVPAAKRRERQQQLAALFRGAANNNsasaaaaaAAAASKRPRELvrSLGRLPSANS 188
4579****************************************************999988887888888777888888888552333344444 PP
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ +++++s+ + ++P+e+s+eavfrcvr++ vd+ ++elaYqtavsigGh+fkGiL+d+G+++
Pahal.D00115.1 189 AMVTTTTSSGDGSGGRFPPELSVEAVFRCVRIGPVDEPDAELAYQTAVSIGGHTFKGILRDHGPAD 254
4444444555556677***********************************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MAGFSLRGSG GGGGRGGDRA GDHPIGADSL FLYARGAAAA AADTAASGGG GGGIGFQLWH 60
PHQQAAAAAA PHTSQFFSSG VATGVVLGRG GGRAGTSCQD CGNNAKKDCA HMRCRTCCRS 120
RGFSCPTHVK STWVPAAKRR ERQQQLAALF RGAANNNSAS AAAAAAAAAS KRPRELVRSL 180
GRLPSANSAM VTTTTSSGDG SGGRFPPELS VEAVFRCVRI GPVDEPDAEL AYQTAVSIGG 240
HTFKGILRDH GPADDAAVGQ LPPSSAEYHQ LTGHAREGSS PAGSSEAAAT VATSAAVLMD 300
PYPTPIGAFA AGTQFFPHNP RT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB678347 | 1e-121 | AB678347.1 Hordeum vulgare subsp. vulgare Lks2 gene for putative short internodesfamily transcription factor, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G66350.1 | 2e-53 | Lateral root primordium (LRP) protein-related |
