![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.C04862.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
bHLH |
Protein Properties |
Length: 386aa MW: 40152.7 Da PI: 6.9964 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.C04862.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pha&pid=Pahal.C04862.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 47.5 | 3.2e-15 | 197 | 243 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++ErrRR++iN++f eL +++P + kK++Ka+iL Av+Y+++Lq
Pahal.C04862.1 197 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 243
5999***********************.....9******************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MDRHMEDSST FLQWAMNQLH HQHPSAAAAA PAYQDGAGAG SSGGAGDREA IFPSLHALRS 60 GACQTQSHSQ PVAASVRVRD LTVQVDHLTN SSSSGDSPGA GGAAMDHDAA AGWSPHTARS 120 RTTGLGGGSN SRPVSWNFSA ASAQPTCESG GVGVVALPDA AMAPRVQLAS AGRRGGSNAG 180 PAAATAAASS SPGPVQDHII AERRRREKIN QRFIELSTVI PGLKKMDKAT ILGDAVKYVR 240 ELQEKVKTLE EDGAHSAGGS SIQSAVLVKK QCHLPDDEAM ASSNGAAAGG VQLPEIEARL 300 SEKSVLLRIH CYNARGLLVR VISEVEQMHL SITHTNVMPF PASTAIITIT AKVEEGFTAT 360 VDEIVRSINS VLHQHYSSSS EETRG*
|
3D Structure ? help Back to Top |
![Structure](draw_protein_structure.php?sp=Pha&pid=Pahal.C04862.1) |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Pha&pid=Pahal.C04862.1) |
No. |
Start |
End |
Sequence |
1 | 201 | 206 | ERRRRE |
2 | 202 | 207 | RRRREK |