PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 386aa MW: 40152.7 Da PI: 6.9964 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.5 | 3.2e-15 | 197 | 243 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN++f eL +++P + kK++Ka+iL Av+Y+++Lq Pahal.C04862.1 197 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 243 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.955 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-19 | 197 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-13 | 198 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-17 | 198 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.76E-16 | 198 | 247 | No hit | No description |
SMART | SM00353 | 5.1E-17 | 199 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MDRHMEDSST FLQWAMNQLH HQHPSAAAAA PAYQDGAGAG SSGGAGDREA IFPSLHALRS 60 GACQTQSHSQ PVAASVRVRD LTVQVDHLTN SSSSGDSPGA GGAAMDHDAA AGWSPHTARS 120 RTTGLGGGSN SRPVSWNFSA ASAQPTCESG GVGVVALPDA AMAPRVQLAS AGRRGGSNAG 180 PAAATAAASS SPGPVQDHII AERRRREKIN QRFIELSTVI PGLKKMDKAT ILGDAVKYVR 240 ELQEKVKTLE EDGAHSAGGS SIQSAVLVKK QCHLPDDEAM ASSNGAAAGG VQLPEIEARL 300 SEKSVLLRIH CYNARGLLVR VISEVEQMHL SITHTNVMPF PASTAIITIT AKVEEGFTAT 360 VDEIVRSINS VLHQHYSSSS EETRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 197 | 252 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 206 | ERRRRE |
2 | 202 | 207 | RRRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808672.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_025808673.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_025808674.1 | 0.0 | transcription factor bHLH25-like | ||||
Refseq | XP_025808675.1 | 0.0 | transcription factor bHLH25-like | ||||
TrEMBL | A0A2S3HFP9 | 0.0 | A0A2S3HFP9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J30022.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04862.1 |