 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.C04803.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
YABBY |
| Protein Properties |
Length: 199aa MW: 22107.1 Da PI: 8.9982 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.C04803.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 239.8 | 5.8e-74 | 4 | 170 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96
++ ++++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+ ++ l+ +++ + + +e+ k ++ n + + ++s++
Pahal.C04803.1 4 QIAPAADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQQD--QLQLFDSQENIKAHGINGSHLEFGSSSSKFRL 96
567899**************************************************99886..44445567888888888877777777777777 PP
YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+++ ++ne++ ++++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
Pahal.C04803.1 97 PMMYSPQNEHHLLQEQTLNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 170
76554555555555555589****************************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:1902183 | Biological Process | regulation of shoot apical meristem development |
| GO:2000024 | Biological Process | regulation of leaf development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 199 aa
Download sequence Send
to blast |
MSAQIAPAAD HVCYVHCNFC NTVLAVSVPG NSMLNIVTVR CGHCTNLLSV NLRALMHSLP 60
EQQDQLQLFD SQENIKAHGI NGSHLEFGSS SSKFRLPMMY SPQNEHHLLQ EQTLNARPPE 120
KRQRVPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL SPGREGGKKL 180
VDEAVSASPA PKKIQGLY*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT035812 | 2e-67 | BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds. |
| GenBank | BT041668 | 2e-67 | BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds. |
| GenBank | BT068409 | 2e-67 | BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds. |
| GenBank | KJ726849 | 2e-67 | KJ726849.1 Zea mays clone pUT3389 C2C2-YABBY transcription factor (YAB5) mRNA, partial cds. |
