PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04770.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 294aa    MW: 30812.6 Da    PI: 7.505
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.32.8e-34371811100
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasn 84 
                     aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a  ai+el+++           ss++a  + +++++s++++
  Pahal.C04770.1  37 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAGAIDELPSLdcsfalpagaaSSPPA--AGDDAEVSTSET 129
                     6899*************************************************************9999998876533333..222223332222 PP

             TCP  85 sssg....................................kaaksaakskks 100
                     s+s+                                    +a+ s+++++++
  Pahal.C04770.1 130 SKSSvlslangptgtaaaaahqanhayngnagafaellhcSANDSKPTQQQQ 181
                     2222344444444454444444445555566666666543222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3339172IPR005333Transcription factor, TCP
PROSITE profilePS5136932.3754098IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEVGMERTA CKRPRAALDG GTAAAAAWRT CRVARAAAGG KDRHSKVVTA RGLRDRRVRL  60
SVPTAIQFYD IQDRLGVDQP SKAIEWLIRA AAGAIDELPS LDCSFALPAG AASSPPAAGD  120
DAEVSTSETS KSSVLSLANG PTGTAAAAAH QANHAYNGNA GAFAELLHCS ANDSKPTQQQ  180
QQQPTLAYYA AQLPSSHAAP AMSFETMPQL AFLQEQPHPA VGFDRGTLQS NVTVAAPLWP  240
PSQQACFLQR FAAAPIDAAG LPFFLGGGTA APPVTVNAEP RLQLWDFKQE RKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-234599155Putative transcription factor PCF6
5zkt_B5e-234599155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810054.10.0transcription factor PCF8-like
SwissprotA2ZMR95e-93PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A2S3HFS20.0A0A2S3HFS2_9POAL; Uncharacterized protein
STRINGPavir.Ca02949.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.26e-30TCP family protein