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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 397aa MW: 42336.5 Da PI: 4.1745 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Pahal.C04543.1 50 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 99 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.66E-30 | 49 | 106 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-27 | 50 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-36 | 50 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-19 | 50 | 107 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.599 | 50 | 107 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-14 | 50 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-8 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MARKRKASDS VDIEVGNDVL NSPPLLPSTD ACAWVSVAVA AAAQQRGRKR FVGVRQRPSG 60 RWVAEIKDTI QKIRVWLGTF DTAEEAARAY DEAACLLRGS NTRTNFWPRP SPAAVAAAAA 120 HPVQPPPPLP AVASSPAPAL PPKVTNLLLL RLRARNQQLF NATAAQQEAA LLQGPLCEGK 180 YGGGDGEECA FQVDDFLSYD CGSSDGNSSQ EMEDEEEEEE EEEEEEELDF QFMDQHAASP 240 TAGCEGGLCS PFDVVAAELG GAVEADDGEP ESAVQELMRR RMDYERKISA SLYALSGVSE 300 CLRMRHGDDA AAGVRDQLTG LREACRKKQR DEVQQQHQEQ APSPESAEDG NGKAAQEECS 360 AGSGAPEAAS SSSEASDGDG DSDVLLWSSL DLAPIC* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809285.1 | 0.0 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A2S3HEX1 | 0.0 | A0A2S3HEX1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00448.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04543.1 |